Hb_005016_130

Information

Type -
Description -
Location Contig5016: 114519-115684
Sequence    

Annotation

kegg
ID rcu:RCOM_1355010
description acylphosphatase, putative
nr
ID XP_012082398.1
description PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
swissprot
ID A5VFP2
description Acylphosphatase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=acyP PE=3 SV=1
trembl
ID A0A067KA32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16534 PE=3 SV=1
Gene Ontology
ID GO:0003998
description acylphosphatase family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45882: 114565-115519 , PASA_asmbl_45883: 113205-115342 , PASA_asmbl_45887: 98266-115048 , PASA_asmbl_45888: 97703-115343
cDNA
(Sanger)
(ID:Location)		 001_H09.ab1: 114779-115343 , 003_O04.ab1: 114614-115344 , 006_B14.ab1: 114797-115482 , 009_P24.ab1: 114774-115481 , 012_K13.ab1: 114797-115482 , 017_J20.ab1: 114807-115519 , 023_D13.ab1: 114779-115476 , 027_A14.ab1: 114807-115519 , 027_O21.ab1: 114614-115344 , 031_D18.ab1: 114807-115519 , 034_A02.ab1: 114776-115482 , 035_N17.ab1: 114779-115343 , 039_G16.ab1: 114651-115344 , 039_N18.ab1: 114654-115292 , 040_H22.ab1: 114614-115344 , 041_G13.ab1: 114807-115519 , 042_K14.ab1: 114793-115343 , 043_A17.ab1: 114651-115343 , 045_N12.ab1: 114779-115343 , 047_N09.ab1: 114797-115482 , 049_E01.ab1: 114779-115343 , 051_E21.ab1: 113205-115342 , 051_F03.ab1: 114776-115482 , 052_M10.ab1: 114807-115519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_130 0.0 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
2 Hb_115919_020 0.0682681327 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_000787_070 0.0697186991 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
4 Hb_000078_030 0.0710856928 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001741_080 0.0742164794 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
6 Hb_010578_090 0.0760816751 - - HEV2.1 [Hevea brasiliensis]
7 Hb_000284_010 0.077245005 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_002298_040 0.0807695056 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
9 Hb_060668_010 0.0917479834 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_008847_010 0.0920451716 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_024505_040 0.0928243619 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
12 Hb_012799_060 0.0939179959 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_001102_010 0.0942024655 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
14 Hb_003540_230 0.0942970797 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
15 Hb_000580_170 0.094471904 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
16 Hb_002221_080 0.096329518 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
17 Hb_000193_230 0.1049144581 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_029879_080 0.1078106831 - - unknown [Populus trichocarpa]
19 Hb_030765_020 0.1078338383 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_006132_060 0.1095028593 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005016_130 Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_000078_030 Hb_000078_030 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_000078_030 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000787_070--Hb_000078_030 Hb_000078_030--Hb_000193_230 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_001102_010 Hb_000078_030--Hb_002298_040 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_029879_080 Hb_029879_080 Hb_010578_090--Hb_029879_080 Hb_010578_090--Hb_002298_040 Hb_010578_090--Hb_115919_020 Hb_010578_090--Hb_000284_010 Hb_048141_010 Hb_048141_010 Hb_010578_090--Hb_048141_010 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_002298_040 Hb_000284_010--Hb_000193_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
807.074 12.2703 3.80241 46.5224 508.12 641.042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1269.14 765.935 659.958 85.9266 7.77236

CAGE analysis