Hb_002298_040

Information

Type -
Description -
Location Contig2298: 139075-141254
Sequence    

Annotation

kegg
ID rcu:RCOM_1590290
description hypothetical protein
nr
ID XP_012071657.1
description PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7B9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002298_040 0.0 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
2 Hb_000193_230 0.0775632749 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
3 Hb_000078_030 0.0779987531 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005016_130 0.0807695056 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
5 Hb_010578_090 0.083641366 - - HEV2.1 [Hevea brasiliensis]
6 Hb_029879_080 0.0939479528 - - unknown [Populus trichocarpa]
7 Hb_000284_010 0.0943614187 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_002221_080 0.094767668 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
9 Hb_115919_020 0.0959840203 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_000787_070 0.1027127141 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
11 Hb_000130_390 0.1063483238 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
12 Hb_001102_010 0.1072343105 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
13 Hb_002890_220 0.1076230535 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
14 Hb_003018_180 0.1122804964 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
15 Hb_000264_190 0.1152438552 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
16 Hb_006787_040 0.1218988225 - - polyadenylate-binding protein, putative [Ricinus communis]
17 Hb_030765_020 0.1224329014 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000849_040 0.1226062882 - - transcription factor, putative [Ricinus communis]
19 Hb_000304_020 0.1226603098 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
20 Hb_000784_130 0.1246752324 - - hypothetical protein JCGZ_22813 [Jatropha curcas]

Gene co-expression network

sample Hb_002298_040 Hb_002298_040 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_000193_230--Hb_000078_030 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000193_230--Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_010578_090 Hb_005016_130--Hb_000284_010 Hb_010578_090--Hb_029879_080 Hb_010578_090--Hb_115919_020 Hb_010578_090--Hb_000284_010 Hb_048141_010 Hb_048141_010 Hb_010578_090--Hb_048141_010 Hb_029879_080--Hb_005016_130 Hb_029879_080--Hb_115919_020 Hb_029879_080--Hb_000284_010 Hb_002221_080 Hb_002221_080 Hb_029879_080--Hb_002221_080 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_002221_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.7116 2.73111 0.534061 1.30971 57.8176 57.0919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.1483 58.152 48.2467 8.27434 0.273809

CAGE analysis