Hb_029879_080

Information

Type -
Description -
Location Contig29879: 67637-67978
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01820g
description POPTRDRAFT_555351; hypothetical protein
nr
ID ABK93184.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P9Y1
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31234: 67463-68343
cDNA
(Sanger)
(ID:Location)		 008_G12.ab1: 67632-68183 , 026_A13.ab1: 67633-68165 , 050_A23.ab1: 67627-68343 , 052_H08.ab1: 67465-68192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_080 0.0 - - unknown [Populus trichocarpa]
2 Hb_010578_090 0.069214218 - - HEV2.1 [Hevea brasiliensis]
3 Hb_002298_040 0.0939479528 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
4 Hb_005016_130 0.1078106831 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
5 Hb_115919_020 0.1156142235 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
6 Hb_000284_010 0.1188471387 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_002221_080 0.1223182491 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
8 Hb_000078_030 0.1278965123 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001892_150 0.1283670279 - - -
10 Hb_043061_010 0.1290653996 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
11 Hb_000753_260 0.1303181573 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
12 Hb_000193_230 0.1397610558 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
13 Hb_007317_220 0.141412114 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
14 Hb_000787_070 0.1420840136 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
15 Hb_001741_080 0.1433312269 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
16 Hb_000720_180 0.1457529739 - - -
17 Hb_000130_390 0.1458076096 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
18 Hb_005450_010 0.1464838024 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
19 Hb_004852_020 0.1468204917 - - -
20 Hb_003018_180 0.147984446 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]

Gene co-expression network

sample Hb_029879_080 Hb_029879_080 Hb_010578_090 Hb_010578_090 Hb_029879_080--Hb_010578_090 Hb_002298_040 Hb_002298_040 Hb_029879_080--Hb_002298_040 Hb_005016_130 Hb_005016_130 Hb_029879_080--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_029879_080--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_029879_080--Hb_000284_010 Hb_002221_080 Hb_002221_080 Hb_029879_080--Hb_002221_080 Hb_010578_090--Hb_005016_130 Hb_010578_090--Hb_002298_040 Hb_010578_090--Hb_115919_020 Hb_010578_090--Hb_000284_010 Hb_048141_010 Hb_048141_010 Hb_010578_090--Hb_048141_010 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_002298_040--Hb_005016_130 Hb_002298_040--Hb_000284_010 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_000078_030 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_000193_230 Hb_115919_020--Hb_002298_040 Hb_000284_010--Hb_000078_030 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_000193_230 Hb_002221_080--Hb_002298_040 Hb_002221_080--Hb_005016_130 Hb_002221_080--Hb_000078_030 Hb_002221_080--Hb_115919_020 Hb_002221_080--Hb_000787_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1980.32 15.7131 4.32265 10.4998 1559.77 1902.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3414.78 1471.67 1119.96 118.647 0.357048

CAGE analysis