Hb_115919_020

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig115919: 7581-10714
Sequence    

Annotation

kegg
ID rcu:RCOM_0747390
description geranylgeranyl pyrophosphate synthase, putative (EC:2.5.1.30)
nr
ID BAF98299.1
description geranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID A9ZN17
description Geranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGPS PE=2 SV=1
Gene Ontology
ID GO:0004161
description geranyl-diphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04793: 1973-6676 , PASA_asmbl_04794: 7688-10685 , PASA_asmbl_04795: 7691-8493
cDNA
(Sanger)
(ID:Location)		 004_O02.ab1: 7691-8360 , 013_M17.ab1: 7688-10685 , 046_P16.ab1: 7706-10685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115919_020 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_000284_010 0.0603515719 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_005016_130 0.0682681327 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_000078_030 0.071731751 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000787_070 0.079505554 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
6 Hb_000193_230 0.0888979803 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
7 Hb_002298_040 0.0959840203 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
8 Hb_010578_090 0.0979346387 - - HEV2.1 [Hevea brasiliensis]
9 Hb_043061_010 0.0980456936 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
10 Hb_001741_080 0.0995329742 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
11 Hb_002221_080 0.1005082512 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
12 Hb_008408_030 0.1019325466 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
13 Hb_000184_180 0.1027113175 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
14 Hb_012305_060 0.1041439498 - - protein translocase, putative [Ricinus communis]
15 Hb_007747_130 0.1065100167 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
16 Hb_006787_040 0.1127371233 - - polyadenylate-binding protein, putative [Ricinus communis]
17 Hb_004410_010 0.1127466805 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
18 Hb_134789_010 0.1131440047 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
19 Hb_001102_010 0.1149952732 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
20 Hb_029879_080 0.1156142235 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_115919_020 Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_115919_020--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_115919_020--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_000284_010--Hb_000078_030 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_002298_040 Hb_000284_010--Hb_000193_230 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000078_030--Hb_000193_230 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_000078_030--Hb_002298_040 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000787_070--Hb_000078_030 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_002298_040--Hb_005016_130 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.243 4.20575 1.37607 10.1418 126.25 198.275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.934 227.05 131.428 19.9022 1.23109

CAGE analysis