Hb_012305_060

Information

Type -
Description -
Location Contig12305: 38943-40967
Sequence    

Annotation

kegg
ID rcu:RCOM_1000020
description protein translocase, putative
nr
ID XP_002519203.1
description protein translocase, putative [Ricinus communis]
swissprot
ID Q0WMZ5
description Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana GN=OEP162 PE=2 SV=1
trembl
ID B9RZN4
description Protein translocase, putative OS=Ricinus communis GN=RCOM_1000020 PE=4 SV=1
Gene Ontology
ID GO:0031359
description outer envelope pore protein 16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07011: 38967-40945 , PASA_asmbl_07012: 41640-54016
cDNA
(Sanger)
(ID:Location)		 002_A22.ab1: 39120-40842 , 007_A09.ab1: 39107-40886 , 008_D23.ab1: 39229-40957 , 010_M22.ab1: 39235-40939 , 010_N13.ab1: 39252-40944 , 015_P15.ab1: 39195-40945 , 025_J08.ab1: 39195-40939 , 039_I13.ab1: 39195-40945 , 041_P15.ab1: 39195-40945 , 052_H07.ab1: 39206-40945 , 052_M04.ab1: 39198-40945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_060 0.0 - - protein translocase, putative [Ricinus communis]
2 Hb_004545_160 0.0873137222 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_000193_230 0.0910560512 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
4 Hb_007625_020 0.0982641516 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
5 Hb_000078_030 0.0996023254 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000284_010 0.100281658 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_007451_030 0.1014760437 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
8 Hb_115919_020 0.1041439498 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_027472_090 0.1042173338 - - -
10 Hb_008408_030 0.106977069 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_000788_120 0.1119117654 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
12 Hb_003057_130 0.1145319009 - - -
13 Hb_001722_040 0.1161642558 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
14 Hb_000580_170 0.1165193829 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_001437_040 0.1191000864 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
16 Hb_002518_250 0.1234304902 - - conserved hypothetical protein 10 [Hevea brasiliensis]
17 Hb_000008_320 0.1258969843 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
18 Hb_000143_050 0.1273659503 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
19 Hb_012799_060 0.1275538549 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_025246_010 0.1275552713 - - -

Gene co-expression network

sample Hb_012305_060 Hb_012305_060 Hb_004545_160 Hb_004545_160 Hb_012305_060--Hb_004545_160 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_007625_020 Hb_007625_020 Hb_012305_060--Hb_007625_020 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_000284_010 Hb_000284_010 Hb_012305_060--Hb_000284_010 Hb_007451_030 Hb_007451_030 Hb_012305_060--Hb_007451_030 Hb_004545_160--Hb_007625_020 Hb_004545_160--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_004545_160--Hb_000366_100 Hb_012395_100 Hb_012395_100 Hb_004545_160--Hb_012395_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050 Hb_000193_230--Hb_000078_030 Hb_002298_040 Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_000193_230--Hb_000284_010 Hb_007625_020--Hb_007451_030 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_000078_030--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_000078_030--Hb_005016_130 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_000078_030--Hb_002298_040 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_002298_040 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_000680_150 Hb_000680_150 Hb_007451_030--Hb_000680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
589.87 58.1139 46.8558 34.366 333.128 580.268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
817.418 675.112 316.155 30.3652 13.9258

CAGE analysis