Hb_000680_150

Information

Type -
Description -
Location Contig680: 162636-166987
Sequence    

Annotation

kegg
ID rcu:RCOM_0312590
description hypothetical protein
nr
ID XP_012068997.1
description PREDICTED: protein STU1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24786 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53759: 162861-166973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_150 0.0 - - PREDICTED: protein STU1-like [Jatropha curcas]
2 Hb_001386_130 0.0635583697 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
3 Hb_000590_090 0.0926565002 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_007451_030 0.1023390342 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
5 Hb_002681_040 0.1078347325 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
6 Hb_001514_020 0.1157767332 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
7 Hb_001493_100 0.1185772081 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
8 Hb_004813_010 0.1203543903 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_178968_150 0.1206879091 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000714_020 0.1239965192 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
11 Hb_002783_230 0.1254399949 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_007992_030 0.1255176015 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
13 Hb_004204_030 0.1292562702 - - unknown [Populus trichocarpa]
14 Hb_002918_280 0.1293624144 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
15 Hb_003788_040 0.1319908854 - - -
16 Hb_005031_070 0.1321026371 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
17 Hb_010883_210 0.132500163 - - PREDICTED: selenoprotein K [Jatropha curcas]
18 Hb_010449_020 0.1335229966 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
19 Hb_007625_020 0.1337259968 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
20 Hb_001623_370 0.1351100712 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000680_150 Hb_000680_150 Hb_001386_130 Hb_001386_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100 Hb_001386_130--Hb_000590_090 Hb_004813_010 Hb_004813_010 Hb_001386_130--Hb_004813_010 Hb_001386_130--Hb_001514_020 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_000193_230 Hb_000193_230 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_007625_020 Hb_007625_020 Hb_007451_030--Hb_007625_020 Hb_012305_060 Hb_012305_060 Hb_007451_030--Hb_012305_060 Hb_004545_160 Hb_004545_160 Hb_007451_030--Hb_004545_160 Hb_001405_050 Hb_001405_050 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_005545_030 Hb_005545_030 Hb_002681_040--Hb_005545_030 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.029 16.7346 8.01008 4.95752 63.131 50.8091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.8555 78.2506 29.5925 8.00581 3.92802

CAGE analysis