Hb_001386_130

Information

Type -
Description -
Location Contig1386: 171067-174331
Sequence    

Annotation

kegg
ID rcu:RCOM_1677040
description Mitochondrial import receptor subunit TOM20, putative
nr
ID XP_002509514.1
description Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
swissprot
ID P92792
description Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1
trembl
ID B9RBI0
description Mitochondrial import receptor subunit TOM20, putative OS=Ricinus communis GN=RCOM_1677040 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10591: 171103-174293
cDNA
(Sanger)
(ID:Location)		 041_C23.ab1: 174198-174284

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_130 0.0 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
2 Hb_000680_150 0.0635583697 - - PREDICTED: protein STU1-like [Jatropha curcas]
3 Hb_000590_090 0.0845594174 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_004813_010 0.1018556912 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_001514_020 0.1144757132 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
6 Hb_001493_100 0.1174715049 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
7 Hb_116701_020 0.1176741512 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002681_040 0.118351298 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
9 Hb_178968_150 0.1187011795 - - zinc finger protein, putative [Ricinus communis]
10 Hb_010883_210 0.1208920602 - - PREDICTED: selenoprotein K [Jatropha curcas]
11 Hb_000714_020 0.1241004562 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
12 Hb_000472_040 0.1250307531 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
13 Hb_004204_030 0.1272511799 - - unknown [Populus trichocarpa]
14 Hb_002783_230 0.1287727819 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_007451_030 0.1297129529 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
16 Hb_005389_140 0.1306028696 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
17 Hb_005714_040 0.1306776156 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000183_070 0.1310250389 - - -
19 Hb_017434_090 0.1323011999 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001269_150 0.132685329 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001386_130 Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_001386_130--Hb_000680_150 Hb_000590_090 Hb_000590_090 Hb_001386_130--Hb_000590_090 Hb_004813_010 Hb_004813_010 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020 Hb_000680_150--Hb_000590_090 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_000680_150--Hb_001514_020 Hb_000680_150--Hb_001493_100 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_004813_010--Hb_001493_100 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_000472_040 Hb_000472_040 Hb_116701_020--Hb_000472_040 Hb_001780_060 Hb_001780_060 Hb_116701_020--Hb_001780_060 Hb_116701_020--Hb_004813_010 Hb_116701_020--Hb_000590_090 Hb_116701_020--Hb_005389_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
502.554 60.4102 28.7505 22.6159 293.243 190.7
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.385 246.773 124.832 56.1401 12.618

CAGE analysis