Hb_012395_100

Information

Type -
Description -
Location Contig12395: 39997-42229
Sequence    

Annotation

kegg
ID rcu:RCOM_1217850
description eukaryotic translation initiation factor 4e, putative
nr
ID XP_002528368.1
description eukaryotic translation initiation factor 4e, putative [Ricinus communis]
swissprot
ID Q03389
description Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1
trembl
ID B9SQU9
description Eukaryotic translation initiation factor 4e, putative OS=Ricinus communis GN=RCOM_1217850 PE=3 SV=1
Gene Ontology
ID GO:0005634
description eukaryotic translation initiation factor isoform 4e-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_100 0.0 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
2 Hb_000175_520 0.1041339157 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001248_020 0.1102741833 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
4 Hb_023675_010 0.1113933561 - - -
5 Hb_036369_010 0.1158072828 - - -
6 Hb_004545_160 0.1207072295 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_004852_020 0.1221902636 - - -
8 Hb_002863_010 0.124634799 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_007625_020 0.1258478 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
10 Hb_170305_020 0.1260780789 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
11 Hb_178345_010 0.1268866975 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
12 Hb_002518_250 0.1345717743 - - conserved hypothetical protein 10 [Hevea brasiliensis]
13 Hb_025246_010 0.1363878402 - - -
14 Hb_003398_060 0.138333768 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000366_100 0.1467566511 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
16 Hb_017895_050 0.1474425483 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
17 Hb_012305_060 0.1502443425 - - protein translocase, putative [Ricinus communis]
18 Hb_003057_050 0.1531973872 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
19 Hb_010578_090 0.1532982022 - - HEV2.1 [Hevea brasiliensis]
20 Hb_000977_140 0.1551405315 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]

Gene co-expression network

sample Hb_012395_100 Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_012395_100--Hb_000175_520 Hb_001248_020 Hb_001248_020 Hb_012395_100--Hb_001248_020 Hb_023675_010 Hb_023675_010 Hb_012395_100--Hb_023675_010 Hb_036369_010 Hb_036369_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_004852_020 Hb_004852_020 Hb_012395_100--Hb_004852_020 Hb_000175_520--Hb_004852_020 Hb_002518_250 Hb_002518_250 Hb_000175_520--Hb_002518_250 Hb_002942_030 Hb_002942_030 Hb_000175_520--Hb_002942_030 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_007317_220 Hb_007317_220 Hb_000175_520--Hb_007317_220 Hb_001248_020--Hb_036369_010 Hb_003398_060 Hb_003398_060 Hb_001248_020--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_001248_020--Hb_025246_010 Hb_001248_020--Hb_023675_010 Hb_001248_020--Hb_004852_020 Hb_000366_100 Hb_000366_100 Hb_023675_010--Hb_000366_100 Hb_023675_010--Hb_036369_010 Hb_023675_010--Hb_004852_020 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_036369_010--Hb_000366_100 Hb_170305_020 Hb_170305_020 Hb_036369_010--Hb_170305_020 Hb_036369_010--Hb_003398_060 Hb_036369_010--Hb_025246_010 Hb_007625_020 Hb_007625_020 Hb_004545_160--Hb_007625_020 Hb_012305_060 Hb_012305_060 Hb_004545_160--Hb_012305_060 Hb_007451_030 Hb_007451_030 Hb_004545_160--Hb_007451_030 Hb_004545_160--Hb_000366_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050 Hb_004852_020--Hb_007317_220 Hb_004852_020--Hb_002942_030 Hb_004852_020--Hb_002518_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.686 0.990447 1.60873 0.993153 20.8017 25.4858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1247 21.2798 4.16218 2.53691 0.135605

CAGE analysis