Hb_003398_060

Information

Type -
Description -
Location Contig3398: 124818-126723
Sequence    

Annotation

kegg
ID rcu:RCOM_0039930
description ftsj, putative
nr
ID XP_012088955.1
description PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID B8FL12
description Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rlmE PE=3 SV=1
trembl
ID A0A067L944
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01437 PE=4 SV=1
Gene Ontology
ID GO:0008168
description ribosomal rna methyltransferase mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35453: 124767-126737 , PASA_asmbl_35454: 124767-126740
cDNA
(Sanger)
(ID:Location)		 007_B17.ab1: 124924-126740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_060 0.0 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_001248_020 0.081440461 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
3 Hb_036369_010 0.0984288311 - - -
4 Hb_003453_010 0.1044729614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000984_190 0.1059568453 - - -
6 Hb_017895_050 0.1083273795 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
7 Hb_025246_010 0.1115304923 - - -
8 Hb_004242_100 0.1119425363 - - RNA binding protein, putative [Ricinus communis]
9 Hb_023675_010 0.1163988056 - - -
10 Hb_001437_040 0.1188108558 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
11 Hb_003086_110 0.1188167799 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
12 Hb_004072_010 0.1227307506 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
13 Hb_001047_010 0.1240184466 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003911_040 0.1245176063 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
15 Hb_084934_010 0.1277050427 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
16 Hb_011016_090 0.1312062234 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
17 Hb_000617_320 0.1321859182 - - 40S ribosomal protein S21B [Hevea brasiliensis]
18 Hb_000997_060 0.1325180188 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
19 Hb_000366_100 0.1338342858 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
20 Hb_000442_100 0.1339357353 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]

Gene co-expression network

sample Hb_003398_060 Hb_003398_060 Hb_001248_020 Hb_001248_020 Hb_003398_060--Hb_001248_020 Hb_036369_010 Hb_036369_010 Hb_003398_060--Hb_036369_010 Hb_003453_010 Hb_003453_010 Hb_003398_060--Hb_003453_010 Hb_000984_190 Hb_000984_190 Hb_003398_060--Hb_000984_190 Hb_017895_050 Hb_017895_050 Hb_003398_060--Hb_017895_050 Hb_025246_010 Hb_025246_010 Hb_003398_060--Hb_025246_010 Hb_001248_020--Hb_036369_010 Hb_001248_020--Hb_025246_010 Hb_012395_100 Hb_012395_100 Hb_001248_020--Hb_012395_100 Hb_023675_010 Hb_023675_010 Hb_001248_020--Hb_023675_010 Hb_004852_020 Hb_004852_020 Hb_001248_020--Hb_004852_020 Hb_000366_100 Hb_000366_100 Hb_036369_010--Hb_000366_100 Hb_036369_010--Hb_023675_010 Hb_170305_020 Hb_170305_020 Hb_036369_010--Hb_170305_020 Hb_036369_010--Hb_025246_010 Hb_003453_010--Hb_017895_050 Hb_001437_040 Hb_001437_040 Hb_003453_010--Hb_001437_040 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_003453_010--Hb_000984_190 Hb_098709_010 Hb_098709_010 Hb_003453_010--Hb_098709_010 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_005941_010 Hb_005941_010 Hb_000984_190--Hb_005941_010 Hb_000984_190--Hb_001437_040 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020 Hb_017895_050--Hb_027892_060 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_000699_110 Hb_000699_110 Hb_025246_010--Hb_000699_110 Hb_025246_010--Hb_000984_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0879 4.91646 1.12949 3.225 20.6482 42.0054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.8186 21.9254 8.8239 6.5279 1.55214

CAGE analysis