Hb_170305_020

Information

Type -
Description -
Location Contig170305: 8716-12088
Sequence    

Annotation

kegg
ID egr:104432552
description exosome complex component CSL4
nr
ID KDP23745.1
description hypothetical protein JCGZ_23578 [Jatropha curcas]
swissprot
ID O59821
description Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2
trembl
ID A0A067JUU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23578 PE=4 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component csl4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170305_020 0.0 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
2 Hb_036369_010 0.0948902608 - - -
3 Hb_000366_100 0.1096411444 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
4 Hb_000617_320 0.1169015232 - - 40S ribosomal protein S21B [Hevea brasiliensis]
5 Hb_007632_250 0.1245379594 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001248_020 0.1246075567 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
7 Hb_012395_100 0.1260780789 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
8 Hb_017895_050 0.1274047312 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
9 Hb_023675_010 0.1293484091 - - -
10 Hb_073973_110 0.1352262301 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
11 Hb_027472_090 0.1393259175 - - -
12 Hb_077562_040 0.139332696 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
13 Hb_048197_010 0.1405270167 - - -
14 Hb_003398_060 0.1413764431 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_007166_050 0.1419557474 - - -
16 Hb_001454_330 0.1436545574 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
17 Hb_004545_160 0.1440979438 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_003057_050 0.1460650328 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
19 Hb_002821_010 0.1477744121 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
20 Hb_004204_030 0.14843411 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_170305_020 Hb_170305_020 Hb_036369_010 Hb_036369_010 Hb_170305_020--Hb_036369_010 Hb_000366_100 Hb_000366_100 Hb_170305_020--Hb_000366_100 Hb_000617_320 Hb_000617_320 Hb_170305_020--Hb_000617_320 Hb_007632_250 Hb_007632_250 Hb_170305_020--Hb_007632_250 Hb_001248_020 Hb_001248_020 Hb_170305_020--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_170305_020--Hb_012395_100 Hb_036369_010--Hb_001248_020 Hb_036369_010--Hb_000366_100 Hb_023675_010 Hb_023675_010 Hb_036369_010--Hb_023675_010 Hb_003398_060 Hb_003398_060 Hb_036369_010--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_036369_010--Hb_025246_010 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_007166_050 Hb_007166_050 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_119583_010 Hb_119583_010 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_001248_020--Hb_003398_060 Hb_001248_020--Hb_025246_010 Hb_001248_020--Hb_012395_100 Hb_001248_020--Hb_023675_010 Hb_004852_020 Hb_004852_020 Hb_001248_020--Hb_004852_020 Hb_000175_520 Hb_000175_520 Hb_012395_100--Hb_000175_520 Hb_012395_100--Hb_023675_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_012395_100--Hb_004852_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.20717 0.332427 0.330578 0.108961 1.92956 3.36911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08185 3.08402 0.596152 0.714017 0

CAGE analysis