Hb_017895_050

Information

Type -
Description -
Location Contig17895: 43352-48186
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01030g
description POPTRDRAFT_903234; hypothetical protein
nr
ID XP_012084645.1
description PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
swissprot
ID Q58DG1
description UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1
trembl
ID B9IDL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s01030g PE=4 SV=1
Gene Ontology
ID GO:0005739
description upf0160 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17245: 30827-42500 , PASA_asmbl_17248: 43603-45772 , PASA_asmbl_17249: 44645-44816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
2 Hb_027892_060 0.077427155 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
3 Hb_003453_010 0.0777088731 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001437_040 0.0815450565 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
5 Hb_004204_030 0.084634416 - - unknown [Populus trichocarpa]
6 Hb_098709_010 0.085340323 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
7 Hb_003911_040 0.0869479571 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
8 Hb_000617_320 0.089020509 - - 40S ribosomal protein S21B [Hevea brasiliensis]
9 Hb_007632_250 0.0891990431 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003125_040 0.0898592179 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
11 Hb_003086_110 0.0900862871 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
12 Hb_118977_020 0.0929397633 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
13 Hb_004607_140 0.0954375498 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
14 Hb_003057_050 0.0975575446 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
15 Hb_002518_250 0.0995519968 - - conserved hypothetical protein 10 [Hevea brasiliensis]
16 Hb_134226_010 0.1012232908 - - 40S ribosomal protein S21e, putative [Ricinus communis]
17 Hb_000984_190 0.1015654879 - - -
18 Hb_002942_020 0.1021737135 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_006569_020 0.1023926681 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_007166_050 0.1040909729 - - -

Gene co-expression network

sample Hb_017895_050 Hb_017895_050 Hb_027892_060 Hb_027892_060 Hb_017895_050--Hb_027892_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_002942_020 Hb_002942_020 Hb_027892_060--Hb_002942_020 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_118977_020 Hb_118977_020 Hb_027892_060--Hb_118977_020 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_003453_010--Hb_001437_040 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_003453_010--Hb_027892_060 Hb_000984_190 Hb_000984_190 Hb_003453_010--Hb_000984_190 Hb_003453_010--Hb_098709_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_001804_040 Hb_001804_040 Hb_004204_030--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_004204_030--Hb_001951_110 Hb_000866_300 Hb_000866_300 Hb_004204_030--Hb_000866_300 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_007632_250 Hb_007632_250 Hb_003911_040--Hb_007632_250 Hb_000035_380 Hb_000035_380 Hb_003911_040--Hb_000035_380 Hb_000997_060 Hb_000997_060 Hb_003911_040--Hb_000997_060 Hb_006637_060 Hb_006637_060 Hb_003911_040--Hb_006637_060 Hb_119583_010 Hb_119583_010 Hb_003911_040--Hb_119583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5075 1.60311 1.7508 1.03153 11.4587 14.5385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6759 10.5845 5.33349 3.23323 1.03942

CAGE analysis