Hb_000700_090

Information

Type -
Description -
Location Contig700: 169016-172406
Sequence    

Annotation

kegg
ID rcu:RCOM_1721280
description protein with unknown function
nr
ID XP_002521116.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q8N5L8
description Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1
trembl
ID B9S547
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721280 PE=4 SV=1
Gene Ontology
ID GO:0005829
description alba dna rna-binding protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54798: 169103-172347
cDNA
(Sanger)
(ID:Location)		 028_J06.ab1: 169136-171380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_090 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_006602_020 0.0505438656 - - unknown [Medicago truncatula]
3 Hb_001902_050 0.0731374659 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
4 Hb_000152_140 0.0741697291 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
5 Hb_004735_010 0.0805226768 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
6 Hb_098709_010 0.0821452731 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
7 Hb_000696_110 0.084475731 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_000365_360 0.0873457634 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
9 Hb_005539_290 0.0894850612 - - unknown [Lotus japonicus]
10 Hb_026048_100 0.0894873128 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
11 Hb_003638_030 0.0903955884 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
12 Hb_010261_020 0.0913919628 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
13 Hb_006602_010 0.0919324402 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
14 Hb_000057_060 0.0919398902 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
15 Hb_000805_090 0.0926802097 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
16 Hb_001369_060 0.0944002179 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
17 Hb_001476_100 0.0968540767 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002357_040 0.0974915898 - - latex-abundant protein [Hevea brasiliensis]
19 Hb_002686_270 0.0976014109 - - conserved hypothetical protein [Ricinus communis]
20 Hb_035524_030 0.0985871979 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000700_090 Hb_000700_090 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_006602_010 Hb_006602_010 Hb_006602_020--Hb_006602_010 Hb_005539_290 Hb_005539_290 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_006602_020--Hb_001902_050 Hb_001902_050--Hb_005539_290 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000152_140--Hb_000696_110 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_004735_010--Hb_006602_020 Hb_004735_010--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_098709_010--Hb_000365_360 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
308.741 69.8552 15.2511 45.4972 297.278 551.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
340.805 243.074 357.873 89.1382 37.6766

CAGE analysis