Hb_005539_290

Information

Type -
Description -
Location Contig5539: 225105-228945
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24350g
description POPTRDRAFT_559672; lesion inducing family protein
nr
ID AFK36439.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S847
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48397: 225128-229098
cDNA
(Sanger)
(ID:Location)		 001_M14.ab1: 225142-229008 , 005_F21.ab1: 225128-228968 , 010_P02.ab1: 225128-228944 , 048_K01.ab1: 225128-228969

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_290 0.0 - - unknown [Lotus japonicus]
2 Hb_001902_050 0.0780661292 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
3 Hb_006602_020 0.0807209285 - - unknown [Medicago truncatula]
4 Hb_002154_050 0.0828109927 - - RNA binding protein, putative [Ricinus communis]
5 Hb_000700_090 0.0894850612 - - protein with unknown function [Ricinus communis]
6 Hb_006602_010 0.093271126 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
7 Hb_000671_100 0.0967535124 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
8 Hb_009558_020 0.0994313692 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
9 Hb_000152_140 0.1009529851 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
10 Hb_000696_110 0.1026471689 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
11 Hb_002686_270 0.1026804531 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002014_080 0.1046076129 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
13 Hb_000049_040 0.1046660514 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
14 Hb_002902_110 0.108244275 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
15 Hb_001476_100 0.10984349 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004735_010 0.1103323342 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
17 Hb_010261_020 0.1108839494 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
18 Hb_000365_360 0.1123908884 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_002357_040 0.1130754658 - - latex-abundant protein [Hevea brasiliensis]
20 Hb_035524_030 0.1130961938 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005539_290 Hb_005539_290 Hb_001902_050 Hb_001902_050 Hb_005539_290--Hb_001902_050 Hb_006602_020 Hb_006602_020 Hb_005539_290--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_005539_290--Hb_002154_050 Hb_000700_090 Hb_000700_090 Hb_005539_290--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_005539_290--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_001902_050--Hb_000700_090 Hb_001902_050--Hb_006602_020 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_004735_010 Hb_004735_010 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100 Hb_006602_020--Hb_000700_090 Hb_006602_020--Hb_006602_010 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_002154_050--Hb_005779_100 Hb_002154_050--Hb_006602_010 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_006602_010--Hb_004735_010 Hb_024714_030 Hb_024714_030 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.221 22.0133 15.0208 59.1991 160.167 293.59
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
206.266 109.57 203.276 55.5171 14.2752

CAGE analysis