Hb_010298_010

Information

Type -
Description -
Location Contig10298: 6561-8631
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14280g
description POPTRDRAFT_766268; hypothetical protein
nr
ID XP_012089584.1
description PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
swissprot
ID Q56XX3
description Uncharacterized protein At2g02148 OS=Arabidopsis thaliana GN=At2g02148 PE=2 SV=1
trembl
ID A0A067JGN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01685 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01165: 6207-34142 , PASA_asmbl_01166: 6207-34142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010298_010 0.0 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
2 Hb_000671_100 0.0845295188 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
3 Hb_010261_020 0.0888696371 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
4 Hb_024714_030 0.0922505104 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
5 Hb_033642_020 0.0961999342 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
6 Hb_000977_310 0.100624661 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
7 Hb_000307_200 0.102909322 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
8 Hb_000878_130 0.1055469052 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013405_130 0.1078824375 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
10 Hb_000017_340 0.1102074912 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
11 Hb_000453_270 0.1109268322 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
12 Hb_001902_050 0.1110960043 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
13 Hb_001369_060 0.111388003 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
14 Hb_000042_230 0.1127330704 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
15 Hb_035524_030 0.1138062009 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009558_020 0.1138485022 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
17 Hb_005288_120 0.115798481 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
18 Hb_002290_060 0.1165325246 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_000186_010 0.1166639413 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
20 Hb_000025_760 0.1167502207 - - -

Gene co-expression network

sample Hb_010298_010 Hb_010298_010 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_024714_030 Hb_024714_030 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_005288_120 Hb_005288_120 Hb_010261_020--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_010261_020--Hb_013405_130 Hb_010261_020--Hb_009558_020 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_024714_030--Hb_002014_080 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_024714_030--Hb_035524_030 Hb_028900_020 Hb_028900_020 Hb_033642_020--Hb_028900_020 Hb_000077_050 Hb_000077_050 Hb_033642_020--Hb_000077_050 Hb_000176_110 Hb_000176_110 Hb_033642_020--Hb_000176_110 Hb_003106_130 Hb_003106_130 Hb_033642_020--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_033642_020--Hb_000025_760 Hb_033642_020--Hb_024714_030 Hb_001040_160 Hb_001040_160 Hb_000977_310--Hb_001040_160 Hb_050455_010 Hb_050455_010 Hb_000977_310--Hb_050455_010 Hb_000568_040 Hb_000568_040 Hb_000977_310--Hb_000568_040 Hb_110364_010 Hb_110364_010 Hb_000977_310--Hb_110364_010 Hb_000390_060 Hb_000390_060 Hb_000977_310--Hb_000390_060 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000307_200--Hb_000077_050 Hb_000307_200--Hb_028900_020 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5474 14.1722 6.53128 9.32743 47.3831 111.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.447 27.7461 32.7089 13.5301 7.54718

CAGE analysis