Hb_010261_020

Information

Type -
Description -
Location Contig10261: 43143-46430
Sequence    

Annotation

kegg
ID rcu:RCOM_1028070
description nucleic acid binding protein, putative
nr
ID KDP45651.1
description hypothetical protein JCGZ_17258 [Jatropha curcas]
swissprot
ID Q8BG79
description CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1
trembl
ID A0A067LB05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17258 PE=4 SV=1
Gene Ontology
ID GO:0003006
description cwf19-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010261_020 0.0 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
2 Hb_005288_120 0.0759377442 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
3 Hb_013405_130 0.0886146376 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
4 Hb_010298_010 0.0888696371 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
5 Hb_009558_020 0.0899796281 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
6 Hb_000671_100 0.0907105741 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
7 Hb_000700_090 0.0913919628 - - protein with unknown function [Ricinus communis]
8 Hb_035524_030 0.0916883864 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000599_120 0.0938598404 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
10 Hb_002014_080 0.0939778076 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_000017_340 0.0981450206 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
12 Hb_001902_050 0.0999317605 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
13 Hb_000365_360 0.1010522631 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_001369_060 0.1041216872 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
15 Hb_000696_110 0.1049209246 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
16 Hb_000984_180 0.1053990266 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
17 Hb_000152_140 0.1064463615 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
18 Hb_000077_050 0.1065852555 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_024714_030 0.1072923856 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
20 Hb_000085_280 0.1085038911 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_010261_020 Hb_010261_020 Hb_005288_120 Hb_005288_120 Hb_010261_020--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_010261_020--Hb_013405_130 Hb_010298_010 Hb_010298_010 Hb_010261_020--Hb_010298_010 Hb_009558_020 Hb_009558_020 Hb_010261_020--Hb_009558_020 Hb_000671_100 Hb_000671_100 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_000017_340 Hb_000017_340 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000085_280 Hb_000085_280 Hb_005288_120--Hb_000085_280 Hb_005288_120--Hb_000671_100 Hb_013405_130--Hb_000085_280 Hb_013405_130--Hb_005288_120 Hb_000186_010 Hb_000186_010 Hb_013405_130--Hb_000186_010 Hb_000042_230 Hb_000042_230 Hb_013405_130--Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_013405_130--Hb_000028_030 Hb_010298_010--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_009558_020--Hb_000671_100 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_009558_020--Hb_007193_100 Hb_000671_100--Hb_024714_030 Hb_000671_100--Hb_002014_080 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81491 0.457543 0.135967 0.367495 2.23888 3.97713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45438 1.18262 1.78012 0.911087 0.493348

CAGE analysis