Hb_000028_030

Information

Type -
Description -
Location Contig28: 42034-70603
Sequence    

Annotation

kegg
ID rcu:RCOM_0566570
description amidase, putative (EC:3.5.1.4)
nr
ID XP_002530483.1
description amidase, putative [Ricinus communis]
swissprot
ID Q9MUK5
description Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1
trembl
ID B9SWW4
description Amidase, putative OS=Ricinus communis GN=RCOM_0566570 PE=4 SV=1
Gene Ontology
ID GO:0031359
description outer envelope protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29166: 42069-70588 , PASA_asmbl_29168: 46306-46725 , PASA_asmbl_29169: 49586-49698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_030 0.0 - - amidase, putative [Ricinus communis]
2 Hb_000042_230 0.0794036861 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
3 Hb_000017_340 0.0894552437 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
4 Hb_003602_040 0.091791702 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_009118_010 0.0931891546 - - methionine aminopeptidase, putative [Ricinus communis]
6 Hb_000152_740 0.093277477 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
7 Hb_005288_120 0.0968923301 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
8 Hb_004608_020 0.1004773036 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
9 Hb_000372_040 0.1027676228 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000186_010 0.1031617874 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
11 Hb_001329_230 0.103202814 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
12 Hb_000077_050 0.1050579016 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_004881_050 0.1061810891 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
14 Hb_000684_180 0.1065185776 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
15 Hb_013405_130 0.106607331 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
16 Hb_005000_100 0.1066128274 - - PCI domain-containing protein 2 [Morus notabilis]
17 Hb_000176_110 0.1066574751 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
18 Hb_000116_170 0.1073432019 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
19 Hb_118301_010 0.1077112343 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
20 Hb_028900_020 0.1099315044 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000028_030 Hb_000028_030 Hb_000042_230 Hb_000042_230 Hb_000028_030--Hb_000042_230 Hb_000017_340 Hb_000017_340 Hb_000028_030--Hb_000017_340 Hb_003602_040 Hb_003602_040 Hb_000028_030--Hb_003602_040 Hb_009118_010 Hb_009118_010 Hb_000028_030--Hb_009118_010 Hb_000152_740 Hb_000152_740 Hb_000028_030--Hb_000152_740 Hb_005288_120 Hb_005288_120 Hb_000028_030--Hb_005288_120 Hb_000042_230--Hb_000152_740 Hb_000042_230--Hb_000017_340 Hb_000186_010 Hb_000186_010 Hb_000042_230--Hb_000186_010 Hb_013405_130 Hb_013405_130 Hb_000042_230--Hb_013405_130 Hb_000042_230--Hb_005288_120 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_063047_010 Hb_063047_010 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_006663_100 Hb_006663_100 Hb_003602_040--Hb_006663_100 Hb_009118_010--Hb_004608_020 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_000152_740--Hb_063047_010 Hb_118301_010 Hb_118301_010 Hb_000152_740--Hb_118301_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000152_740--Hb_000017_340 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000085_280 Hb_000085_280 Hb_005288_120--Hb_000085_280 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.6456 15.2719 12.1443 11.3033 74.3477 126.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.4716 25.2654 28.0112 33.1872 18.3055

CAGE analysis