Hb_005000_100

Information

Type -
Description -
Location Contig5000: 86526-90195
Sequence    

Annotation

kegg
ID pxb:103941301
description PCI domain-containing protein 2-like
nr
ID XP_010090037.1
description PCI domain-containing protein 2 [Morus notabilis]
swissprot
ID Q5FWP8
description PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1
trembl
ID W9QUM0
description PCI domain-containing protein 2 OS=Morus notabilis GN=L484_027267 PE=4 SV=1
Gene Ontology
ID GO:0007165
description pci domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45797: 87984-88140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_100 0.0 - - PCI domain-containing protein 2 [Morus notabilis]
2 Hb_004881_050 0.0851736527 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
3 Hb_000152_740 0.0863531102 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
4 Hb_006913_040 0.0876717821 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
5 Hb_024990_010 0.0900326161 - - PREDICTED: la protein 1 [Jatropha curcas]
6 Hb_003581_020 0.0920827361 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_001221_040 0.0950094822 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
8 Hb_007668_040 0.0974622261 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
9 Hb_000814_090 0.0984453799 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004450_010 0.099840462 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_005129_050 0.1004622076 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
12 Hb_000017_340 0.1006972313 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
13 Hb_005635_010 0.1022387089 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
14 Hb_002820_040 0.1032217362 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021409_170 0.1042722901 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_061908_010 0.1044436885 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
17 Hb_004608_020 0.1051210246 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
18 Hb_003434_060 0.105946311 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
19 Hb_063047_010 0.1061752112 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
20 Hb_000028_030 0.1066128274 - - amidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005000_100 Hb_005000_100 Hb_004881_050 Hb_004881_050 Hb_005000_100--Hb_004881_050 Hb_000152_740 Hb_000152_740 Hb_005000_100--Hb_000152_740 Hb_006913_040 Hb_006913_040 Hb_005000_100--Hb_006913_040 Hb_024990_010 Hb_024990_010 Hb_005000_100--Hb_024990_010 Hb_003581_020 Hb_003581_020 Hb_005000_100--Hb_003581_020 Hb_001221_040 Hb_001221_040 Hb_005000_100--Hb_001221_040 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_000152_740--Hb_063047_010 Hb_118301_010 Hb_118301_010 Hb_000152_740--Hb_118301_010 Hb_000042_230 Hb_000042_230 Hb_000152_740--Hb_000042_230 Hb_000017_340 Hb_000017_340 Hb_000152_740--Hb_000017_340 Hb_000028_030 Hb_000028_030 Hb_000152_740--Hb_000028_030 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_000331_190 Hb_000331_190 Hb_024990_010--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_003581_020--Hb_007668_040 Hb_003581_020--Hb_004881_050 Hb_003581_020--Hb_000372_040 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52828 1.32532 0.810186 0.93574 3.62616 6.9308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60547 1.37862 0.963471 2.31956 0.68861

CAGE analysis