Hb_000042_230

Information

Type -
Description -
Location Contig42: 191167-200415
Sequence    

Annotation

kegg
ID rcu:RCOM_0517460
description Stromal membrane-associated protein, putative
nr
ID XP_012070651.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
swissprot
ID Q9FL69
description Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1
trembl
ID A0A067KRU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00698 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable adp-ribosylation factor gtpase-activating protein agd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41469: 191296-200208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_230 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
2 Hb_000028_030 0.0794036861 - - amidase, putative [Ricinus communis]
3 Hb_000152_740 0.0864684854 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
4 Hb_000017_340 0.0878000156 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
5 Hb_000186_010 0.0983024165 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
6 Hb_013405_130 0.1064312063 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
7 Hb_005288_120 0.1067046297 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
8 Hb_010298_010 0.1127330704 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
9 Hb_118301_010 0.1128360071 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
10 Hb_004608_020 0.1130034469 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_005000_100 0.1131444747 - - PCI domain-containing protein 2 [Morus notabilis]
12 Hb_000568_040 0.1180003673 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
13 Hb_000671_100 0.1184911839 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
14 Hb_010261_020 0.1189820137 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
15 Hb_000307_200 0.1191284293 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
16 Hb_009118_010 0.1192920905 - - methionine aminopeptidase, putative [Ricinus communis]
17 Hb_063047_010 0.1216574881 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
18 Hb_002023_020 0.1229559049 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
19 Hb_004881_050 0.1243710184 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_028900_020 0.1246396229 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000042_230 Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_000042_230--Hb_000028_030 Hb_000152_740 Hb_000152_740 Hb_000042_230--Hb_000152_740 Hb_000017_340 Hb_000017_340 Hb_000042_230--Hb_000017_340 Hb_000186_010 Hb_000186_010 Hb_000042_230--Hb_000186_010 Hb_013405_130 Hb_013405_130 Hb_000042_230--Hb_013405_130 Hb_005288_120 Hb_005288_120 Hb_000042_230--Hb_005288_120 Hb_000028_030--Hb_000017_340 Hb_003602_040 Hb_003602_040 Hb_000028_030--Hb_003602_040 Hb_009118_010 Hb_009118_010 Hb_000028_030--Hb_009118_010 Hb_000028_030--Hb_000152_740 Hb_000028_030--Hb_005288_120 Hb_063047_010 Hb_063047_010 Hb_000152_740--Hb_063047_010 Hb_118301_010 Hb_118301_010 Hb_000152_740--Hb_118301_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000152_740--Hb_000017_340 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_000085_280 Hb_000085_280 Hb_000186_010--Hb_000085_280 Hb_000028_050 Hb_000028_050 Hb_000186_010--Hb_000028_050 Hb_000186_010--Hb_005288_120 Hb_000186_010--Hb_013405_130 Hb_001252_170 Hb_001252_170 Hb_000186_010--Hb_001252_170 Hb_013405_130--Hb_000085_280 Hb_010261_020 Hb_010261_020 Hb_013405_130--Hb_010261_020 Hb_013405_130--Hb_005288_120 Hb_013405_130--Hb_000028_030 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_005288_120--Hb_010261_020 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_005288_120--Hb_000085_280 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.5537 16.5566 10.6393 17.1651 77.6859 159.401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.7629 21.5446 33.7453 41.1321 11.624

CAGE analysis