Hb_000307_200

Information

Type -
Description -
Location Contig307: 189938-190411
Sequence    

Annotation

kegg
ID rcu:RCOM_0811430
description hypothetical protein
nr
ID XP_012077742.1
description PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32431: 189921-190834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_200 0.0 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
2 Hb_003434_060 0.0777504805 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
3 Hb_002046_040 0.0854077764 - - PREDICTED: topless-related protein 4 [Malus domestica]
4 Hb_000077_050 0.0872195677 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_028900_020 0.0895549636 - - unnamed protein product [Coffea canephora]
6 Hb_000390_060 0.0896831526 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
7 Hb_000045_070 0.089894948 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025814_010 0.0905901162 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
9 Hb_012286_050 0.0922251884 - - PREDICTED: syntaxin-61 [Jatropha curcas]
10 Hb_002023_020 0.0924001229 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
11 Hb_000671_100 0.0936327785 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
12 Hb_000017_340 0.096224756 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
13 Hb_033312_140 0.0968394442 - - RNA and export factor-binding family protein [Populus trichocarpa]
14 Hb_000364_150 0.0999101327 - - -
15 Hb_005883_050 0.1008792489 - - PREDICTED: transportin-3 [Jatropha curcas]
16 Hb_000230_330 0.1020449366 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
17 Hb_010298_010 0.102909322 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
18 Hb_020902_010 0.1042272686 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
19 Hb_002811_120 0.1042431279 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
20 Hb_024714_030 0.1051996939 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_200 Hb_000307_200 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000041_220 Hb_000041_220 Hb_002046_040--Hb_000041_220 Hb_000284_210 Hb_000284_210 Hb_002046_040--Hb_000284_210 Hb_025012_010 Hb_025012_010 Hb_002046_040--Hb_025012_010 Hb_000017_340 Hb_000017_340 Hb_002046_040--Hb_000017_340 Hb_002046_040--Hb_000316_030 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_000077_050--Hb_003434_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_028900_020--Hb_000077_050 Hb_033642_020 Hb_033642_020 Hb_028900_020--Hb_033642_020 Hb_028900_020--Hb_003434_060 Hb_000012_090 Hb_000012_090 Hb_028900_020--Hb_000012_090 Hb_000176_110 Hb_000176_110 Hb_028900_020--Hb_000176_110 Hb_000390_060--Hb_000230_330 Hb_000390_060--Hb_000120_500 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030 Hb_025814_010 Hb_025814_010 Hb_000045_070--Hb_025814_010 Hb_009543_030 Hb_009543_030 Hb_000045_070--Hb_009543_030 Hb_000045_070--Hb_028900_020 Hb_005735_030 Hb_005735_030 Hb_000045_070--Hb_005735_030 Hb_001902_050 Hb_001902_050 Hb_000045_070--Hb_001902_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1964 11.7683 7.81546 18.3652 56.5115 107.465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0687 27.7783 34.359 23.7506 10.6401

CAGE analysis