Hb_050455_010

Information

Type -
Description -
Location Contig50455: 7587-8732
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10790g
description POPTRDRAFT_819236; hypothetical protein
nr
ID XP_012089705.1
description PREDICTED: prosaposin isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00372 PE=4 SV=1
Gene Ontology
ID GO:0006629
description proactivator polypeptide-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050455_010 0.0 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
2 Hb_000069_160 0.0641691585 - - -
3 Hb_002982_040 0.070682072 - - mta/sah nucleosidase, putative [Ricinus communis]
4 Hb_003847_080 0.0877331452 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
5 Hb_185830_020 0.0920604939 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_012305_050 0.092934646 - - unnamed protein product [Coffea canephora]
7 Hb_000849_070 0.0939762858 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
8 Hb_006332_010 0.0951710358 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
9 Hb_000003_480 0.0966100736 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
10 Hb_000977_310 0.0970972931 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
11 Hb_001124_210 0.0971513351 - - conserved hypothetical protein [Ricinus communis]
12 Hb_137403_010 0.0983213462 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
13 Hb_000183_040 0.099268929 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
14 Hb_007317_190 0.1002825112 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_008511_050 0.1003237257 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
16 Hb_001655_070 0.1003914258 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
17 Hb_000031_220 0.1020508596 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
18 Hb_002400_070 0.1026291539 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
19 Hb_002217_310 0.1042110379 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
20 Hb_187739_020 0.1063718605 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_050455_010 Hb_050455_010 Hb_000069_160 Hb_000069_160 Hb_050455_010--Hb_000069_160 Hb_002982_040 Hb_002982_040 Hb_050455_010--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_050455_010--Hb_003847_080 Hb_185830_020 Hb_185830_020 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_000849_070 Hb_000849_070 Hb_050455_010--Hb_000849_070 Hb_002217_310 Hb_002217_310 Hb_000069_160--Hb_002217_310 Hb_000069_160--Hb_002982_040 Hb_000069_160--Hb_003847_080 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_010691_060 Hb_010691_060 Hb_185830_020--Hb_010691_060 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_012305_050--Hb_004128_190 Hb_012305_050--Hb_022250_130 Hb_000245_130 Hb_000245_130 Hb_012305_050--Hb_000245_130 Hb_012305_050--Hb_185830_020 Hb_000347_200 Hb_000347_200 Hb_012305_050--Hb_000347_200 Hb_000849_070--Hb_002217_310 Hb_000849_070--Hb_001124_210 Hb_000849_070--Hb_003847_080 Hb_002400_070 Hb_002400_070 Hb_000849_070--Hb_002400_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
503.904 436.776 99.915 440.836 576.554 1172.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
730.877 454.345 493.33 340.421 107.204

CAGE analysis