Hb_002400_070

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2400: 68399-82838
Sequence    

Annotation

kegg
ID rcu:RCOM_0923890
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012077506.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID B9RP35
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable lrr receptor-like serine threonine-protein kinase at1g56140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25151: 68674-69087 , PASA_asmbl_25152: 69672-77713 , PASA_asmbl_25153: 79106-79689 , PASA_asmbl_25154: 81072-82857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_070 0.0 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
2 Hb_001655_070 0.0882074932 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
3 Hb_000849_070 0.0984583089 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
4 Hb_000703_090 0.0990284115 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
5 Hb_003656_130 0.0999858827 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
6 Hb_050455_010 0.1026291539 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
7 Hb_123475_010 0.1049452637 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
8 Hb_015941_030 0.1118035505 - - unknown [Populus trichocarpa]
9 Hb_003494_240 0.1125467487 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
10 Hb_001124_210 0.1130731777 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000116_480 0.1131203746 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
12 Hb_000069_160 0.1148765239 - - -
13 Hb_000814_090 0.1151354165 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000237_230 0.115874391 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
15 Hb_001454_060 0.1170204474 - - uncharacterized protein LOC100527252 [Glycine max]
16 Hb_002701_080 0.1183872985 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
17 Hb_000236_370 0.1194221788 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
18 Hb_000012_090 0.119539123 - - 3'-5' exonuclease, putative [Ricinus communis]
19 Hb_000059_210 0.1198470988 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000418_100 0.1200317212 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]

Gene co-expression network

sample Hb_002400_070 Hb_002400_070 Hb_001655_070 Hb_001655_070 Hb_002400_070--Hb_001655_070 Hb_000849_070 Hb_000849_070 Hb_002400_070--Hb_000849_070 Hb_000703_090 Hb_000703_090 Hb_002400_070--Hb_000703_090 Hb_003656_130 Hb_003656_130 Hb_002400_070--Hb_003656_130 Hb_050455_010 Hb_050455_010 Hb_002400_070--Hb_050455_010 Hb_123475_010 Hb_123475_010 Hb_002400_070--Hb_123475_010 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_000069_160 Hb_000069_160 Hb_000849_070--Hb_000069_160 Hb_002217_310 Hb_002217_310 Hb_000849_070--Hb_002217_310 Hb_000849_070--Hb_050455_010 Hb_001124_210 Hb_001124_210 Hb_000849_070--Hb_001124_210 Hb_003847_080 Hb_003847_080 Hb_000849_070--Hb_003847_080 Hb_003494_240 Hb_003494_240 Hb_000703_090--Hb_003494_240 Hb_002215_050 Hb_002215_050 Hb_000703_090--Hb_002215_050 Hb_000703_090--Hb_015941_030 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_000012_090 Hb_000012_090 Hb_003656_130--Hb_000012_090 Hb_010120_030 Hb_010120_030 Hb_003656_130--Hb_010120_030 Hb_018790_030 Hb_018790_030 Hb_003656_130--Hb_018790_030 Hb_000956_030 Hb_000956_030 Hb_003656_130--Hb_000956_030 Hb_000803_300 Hb_000803_300 Hb_003656_130--Hb_000803_300 Hb_002149_020 Hb_002149_020 Hb_003656_130--Hb_002149_020 Hb_050455_010--Hb_000069_160 Hb_002982_040 Hb_002982_040 Hb_050455_010--Hb_002982_040 Hb_050455_010--Hb_003847_080 Hb_185830_020 Hb_185830_020 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_061908_010 Hb_061908_010 Hb_123475_010--Hb_061908_010 Hb_000169_010 Hb_000169_010 Hb_123475_010--Hb_000169_010 Hb_123475_010--Hb_001124_210 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_123475_010--Hb_000956_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7431 10.7934 2.25128 10.3145 21.9702 26.2073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8779 11.3961 11.6288 8.68564 0.607

CAGE analysis