Hb_000069_160

Information

Type -
Description -
Location Contig69: 130137-130881
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54185: 130202-130974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_160 0.0 - - -
2 Hb_050455_010 0.0641691585 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
3 Hb_002217_310 0.0688576819 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
4 Hb_002982_040 0.0800120376 - - mta/sah nucleosidase, putative [Ricinus communis]
5 Hb_003847_080 0.0805698829 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
6 Hb_000849_070 0.0826382998 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
7 Hb_003502_080 0.0837983735 - - vacuolar protein sorting, putative [Ricinus communis]
8 Hb_185830_020 0.0861446159 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_001124_210 0.0925630538 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005170_040 0.0968049204 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
11 Hb_021409_020 0.0969065911 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
12 Hb_012305_050 0.0987545424 - - unnamed protein product [Coffea canephora]
13 Hb_000183_040 0.0997881826 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
14 Hb_000343_160 0.1012463545 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
15 Hb_006487_050 0.1012599933 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
16 Hb_006332_010 0.1018845784 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
17 Hb_002067_120 0.1020437917 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
18 Hb_137403_010 0.1028901277 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
19 Hb_003656_140 0.1036325363 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
20 Hb_008511_050 0.1038180394 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_160 Hb_000069_160 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_002217_310 Hb_002217_310 Hb_000069_160--Hb_002217_310 Hb_002982_040 Hb_002982_040 Hb_000069_160--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_000069_160--Hb_003847_080 Hb_000849_070 Hb_000849_070 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_050455_010--Hb_002982_040 Hb_050455_010--Hb_003847_080 Hb_185830_020 Hb_185830_020 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_050455_010--Hb_000849_070 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_002217_310--Hb_003847_080 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_003847_080--Hb_185830_020 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_000849_070--Hb_001124_210 Hb_000849_070--Hb_003847_080 Hb_002400_070 Hb_002400_070 Hb_000849_070--Hb_002400_070 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06145 2.48243 1.21209 4.48028 4.33304 8.19558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12367 3.48481 3.39419 2.47472 0.751288

CAGE analysis