Hb_021409_020

Information

Type -
Description -
Location Contig21409: 6549-8164
Sequence    

Annotation

kegg
ID mdm:103414687
description protein yippee-like At4g27745
nr
ID XP_008351275.1
description PREDICTED: protein yippee-like At4g27745 [Malus domestica]
swissprot
ID Q9T096
description Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2
trembl
ID A0A0A9G7J9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22106: 6561-8155
cDNA
(Sanger)
(ID:Location)		 044_C22.ab1: 6567-8141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_020 0.0 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
2 Hb_000229_040 0.0670512933 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
3 Hb_002811_360 0.0805130637 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
4 Hb_003502_080 0.0814464614 - - vacuolar protein sorting, putative [Ricinus communis]
5 Hb_000045_090 0.0856985946 - - PREDICTED: syntaxin-31 [Jatropha curcas]
6 Hb_002217_310 0.0858858663 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
7 Hb_003195_060 0.0861418232 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
8 Hb_039837_010 0.0882669986 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
9 Hb_185830_020 0.0904933722 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_168000_010 0.0936688011 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
11 Hb_003195_070 0.0944299786 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_006332_010 0.095296845 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
13 Hb_005170_040 0.0957275525 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
14 Hb_000103_180 0.0964211128 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
15 Hb_000284_110 0.0966620383 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
16 Hb_000069_160 0.0969065911 - - -
17 Hb_003847_080 0.0978106524 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
18 Hb_011671_240 0.0978874234 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
19 Hb_002774_060 0.0984107915 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
20 Hb_022250_130 0.098655336 - - inositol hexaphosphate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_021409_020 Hb_021409_020 Hb_000229_040 Hb_000229_040 Hb_021409_020--Hb_000229_040 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_003502_080 Hb_003502_080 Hb_021409_020--Hb_003502_080 Hb_000045_090 Hb_000045_090 Hb_021409_020--Hb_000045_090 Hb_002217_310 Hb_002217_310 Hb_021409_020--Hb_002217_310 Hb_003195_060 Hb_003195_060 Hb_021409_020--Hb_003195_060 Hb_000229_040--Hb_003195_060 Hb_168000_010 Hb_168000_010 Hb_000229_040--Hb_168000_010 Hb_004545_060 Hb_004545_060 Hb_000229_040--Hb_004545_060 Hb_000229_040--Hb_000045_090 Hb_022250_130 Hb_022250_130 Hb_000229_040--Hb_022250_130 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_000069_160 Hb_000069_160 Hb_002217_310--Hb_000069_160 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_000849_070 Hb_000849_070 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_003847_080 Hb_003847_080 Hb_002217_310--Hb_003847_080 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.932 6.53707 8.73115 19.6256 23.1622 37.5323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.606 18.8067 23.6725 14.795 4.89243

CAGE analysis