Hb_005754_060

Information

Type -
Description -
Location Contig5754: 88319-122399
Sequence    

Annotation

kegg
ID rcu:RCOM_0723200
description hypothetical protein
nr
ID XP_002524862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XZU0
description Probable phosphoinositide phosphatase SAC9 OS=Arabidopsis thaliana GN=SAC9 PE=1 SV=1
trembl
ID B9SFU3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0723200 PE=4 SV=1
Gene Ontology
ID GO:0042578
description probable phosphoinositide phosphatase sac9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49652: 88129-91388 , PASA_asmbl_49653: 93926-120337 , PASA_asmbl_49654: 114240-116794 , PASA_asmbl_49657: 103614-104143
cDNA
(Sanger)
(ID:Location)		 001_A16.ab1: 88894-91388 , 005_B05.ab1: 88890-91388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009048_040 0.0638476468 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
3 Hb_071736_010 0.0669690688 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
4 Hb_005883_050 0.0719472763 - - PREDICTED: transportin-3 [Jatropha curcas]
5 Hb_000395_170 0.0738956051 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
6 Hb_000023_140 0.0741720027 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
7 Hb_001454_210 0.0785793916 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
8 Hb_003195_060 0.0794341576 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
9 Hb_001017_040 0.0797821813 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
10 Hb_009111_050 0.0806802154 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
11 Hb_000803_150 0.0842702089 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
12 Hb_004109_090 0.0844440569 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_002811_360 0.0854555777 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
14 Hb_001855_010 0.0860583679 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
15 Hb_001135_160 0.0866340274 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
16 Hb_004724_200 0.086649658 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
17 Hb_007951_050 0.0871683503 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000057_040 0.0883489866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000421_260 0.0885132742 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
20 Hb_002890_340 0.0890265366 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005754_060 Hb_005754_060 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_071736_010 Hb_071736_010 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_000023_140 Hb_000023_140 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_004109_090 Hb_004109_090 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_071736_010--Hb_005883_050 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_000395_170--Hb_004109_090 Hb_000023_140--Hb_002616_050 Hb_000023_140--Hb_001855_010 Hb_005063_040 Hb_005063_040 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_001454_210--Hb_028872_140 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.8723 11.8413 15.7291 18.1969 47.8224 75.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9166 37.773 56.1734 20.7693 19.2112

CAGE analysis