Hb_000204_040

Information

Type -
Description -
Location Contig204: 33230-36440
Sequence    

Annotation

kegg
ID rcu:RCOM_0804420
description hypothetical protein
nr
ID XP_012078612.1
description PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
swissprot
ID Q6NQH9
description Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana GN=CID6 PE=2 SV=1
trembl
ID A0A067K7T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13206 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20890: 33259-36480 , PASA_asmbl_20891: 36217-36381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_040 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
2 Hb_000120_500 0.0744520929 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
3 Hb_000943_070 0.0756042572 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
4 Hb_141131_010 0.0761010384 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
5 Hb_000749_150 0.0771955634 - - -
6 Hb_000364_010 0.0783246303 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
7 Hb_003502_080 0.0834844531 - - vacuolar protein sorting, putative [Ricinus communis]
8 Hb_005306_110 0.087723156 - - casein kinase, putative [Ricinus communis]
9 Hb_000390_060 0.0881758419 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
10 Hb_001124_210 0.0905278481 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005432_010 0.0907647683 - - -
12 Hb_109842_010 0.0913593676 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
13 Hb_002215_050 0.0929943897 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_000386_040 0.0939860467 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_002811_360 0.0963991031 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
16 Hb_004944_010 0.097525976 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
17 Hb_000322_100 0.097718789 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
18 Hb_039837_010 0.0980529273 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
19 Hb_002774_070 0.0980531836 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
20 Hb_003609_040 0.0984554496 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_000204_040 Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_003642_060 Hb_003642_060 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000749_150--Hb_000120_500 Hb_006487_050 Hb_006487_050 Hb_000364_010--Hb_006487_050 Hb_000364_010--Hb_000620_080 Hb_000031_030 Hb_000031_030 Hb_000364_010--Hb_000031_030 Hb_000364_010--Hb_141131_010 Hb_006816_390 Hb_006816_390 Hb_000364_010--Hb_006816_390 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.4381 23.7275 13.4976 35.501 55.502 89.6302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.0273 46.4217 46.8353 15.0888 12.232

CAGE analysis