Hb_000031_030

Information

Type -
Description -
Location Contig31: 30851-37120
Sequence    

Annotation

kegg
ID pxb:103953576
description plasma membrane ATPase 4-like
nr
ID XP_012076337.1
description PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
swissprot
ID Q03194
description Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1
trembl
ID A0A067KMC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07016 PE=3 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane atpase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32769: 30947-37394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_030 0.0 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
2 Hb_000364_010 0.0964321557 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
3 Hb_000204_040 0.1185165138 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
4 Hb_008511_050 0.1208681238 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
5 Hb_000236_250 0.1253706156 - - conserved hypothetical protein [Ricinus communis]
6 Hb_071736_010 0.1295996841 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
7 Hb_006487_050 0.130011072 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
8 Hb_003195_060 0.1301081079 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
9 Hb_006816_390 0.1338865305 - - protein phosphatase, putative [Ricinus communis]
10 Hb_001433_220 0.1370301864 - - protein phosphatase, putative [Ricinus communis]
11 Hb_014568_030 0.1388122902 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
12 Hb_000365_310 0.1400215163 - - auxin:hydrogen symporter, putative [Ricinus communis]
13 Hb_005883_050 0.1412679192 - - PREDICTED: transportin-3 [Jatropha curcas]
14 Hb_032215_050 0.1430846826 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
15 Hb_001124_080 0.1431796585 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
16 Hb_011282_030 0.1432429973 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
17 Hb_000258_080 0.1435138354 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
18 Hb_005167_040 0.1437627105 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
19 Hb_001047_020 0.1440722 - - -
20 Hb_021409_020 0.1447595893 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]

Gene co-expression network

sample Hb_000031_030 Hb_000031_030 Hb_000364_010 Hb_000364_010 Hb_000031_030--Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_006487_050 Hb_006487_050 Hb_000031_030--Hb_006487_050 Hb_000364_010--Hb_000204_040 Hb_000364_010--Hb_006487_050 Hb_000620_080 Hb_000620_080 Hb_000364_010--Hb_000620_080 Hb_141131_010 Hb_141131_010 Hb_000364_010--Hb_141131_010 Hb_006816_390 Hb_006816_390 Hb_000364_010--Hb_006816_390 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_003195_060 Hb_003195_060 Hb_008511_050--Hb_003195_060 Hb_007192_080 Hb_007192_080 Hb_008511_050--Hb_007192_080 Hb_006332_010 Hb_006332_010 Hb_008511_050--Hb_006332_010 Hb_002200_130 Hb_002200_130 Hb_008511_050--Hb_002200_130 Hb_050455_010 Hb_050455_010 Hb_008511_050--Hb_050455_010 Hb_023344_030 Hb_023344_030 Hb_008511_050--Hb_023344_030 Hb_001584_110 Hb_001584_110 Hb_000236_250--Hb_001584_110 Hb_014568_030 Hb_014568_030 Hb_000236_250--Hb_014568_030 Hb_005280_010 Hb_005280_010 Hb_000236_250--Hb_005280_010 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_185467_020 Hb_185467_020 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_000069_160 Hb_000069_160 Hb_006487_050--Hb_000069_160 Hb_137403_010 Hb_137403_010 Hb_006487_050--Hb_137403_010 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.8824 11.8437 4.45561 39.6775 36.3175 80.0983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3466 24.3412 53.9982 10.1979 12.7533

CAGE analysis