Hb_000364_010

Information

Type -
Description -
Location Contig364: 5253-10443
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID CBL94163.1
description putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
swissprot
ID -
description -
trembl
ID I1IWC2
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI5G03654 PE=4 SV=1
Gene Ontology
ID GO:0097159
description solanesyl diphosphate synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37423: 8206-13897 , PASA_asmbl_37425: 8322-8955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_010 0.0 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
2 Hb_000204_040 0.0783246303 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
3 Hb_006487_050 0.0847973544 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
4 Hb_000620_080 0.0904133554 - - hypothetical protein F775_32679 [Aegilops tauschii]
5 Hb_000031_030 0.0964321557 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
6 Hb_141131_010 0.0966487337 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
7 Hb_006816_390 0.102512946 - - protein phosphatase, putative [Ricinus communis]
8 Hb_008511_050 0.1042879474 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
9 Hb_000386_040 0.1046998467 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_003502_080 0.1069322152 - - vacuolar protein sorting, putative [Ricinus communis]
11 Hb_002529_060 0.107569299 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
12 Hb_001124_210 0.1081441846 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002112_040 0.1090220171 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
14 Hb_000943_070 0.1109833741 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
15 Hb_000608_030 0.1111741166 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
16 Hb_000384_090 0.1134312482 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
17 Hb_010120_030 0.1135374615 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_000069_160 0.1141404182 - - -
19 Hb_000023_140 0.1145745886 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
20 Hb_071736_010 0.1153905225 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000364_010 Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000364_010--Hb_000204_040 Hb_006487_050 Hb_006487_050 Hb_000364_010--Hb_006487_050 Hb_000620_080 Hb_000620_080 Hb_000364_010--Hb_000620_080 Hb_000031_030 Hb_000031_030 Hb_000364_010--Hb_000031_030 Hb_141131_010 Hb_141131_010 Hb_000364_010--Hb_141131_010 Hb_006816_390 Hb_006816_390 Hb_000364_010--Hb_006816_390 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_000069_160 Hb_000069_160 Hb_006487_050--Hb_000069_160 Hb_137403_010 Hb_137403_010 Hb_006487_050--Hb_137403_010 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_001124_210 Hb_001124_210 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_000031_030--Hb_006487_050 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_141131_010--Hb_002217_310 Hb_007477_080 Hb_007477_080 Hb_006816_390--Hb_007477_080 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_001100_050 Hb_001100_050 Hb_006816_390--Hb_001100_050 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91055 1.78659 1.00246 3.85054 4.4437 8.67999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32542 3.73292 4.32581 0.901453 1.56782

CAGE analysis