Hb_000042_270

Information

Type -
Description -
Location Contig42: 222584-239034
Sequence    

Annotation

kegg
ID rcu:RCOM_1254430
description myosin vIII, putative
nr
ID XP_002525757.1
description myosin vIII, putative [Ricinus communis]
swissprot
ID F4K0A6
description Myosin-2 OS=Arabidopsis thaliana GN=VIII-2 PE=2 SV=1
trembl
ID B9SID8
description Myosin vIII, putative OS=Ricinus communis GN=RCOM_1254430 PE=4 SV=1
Gene Ontology
ID GO:0005743
description myosin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41475: 223506-229272 , PASA_asmbl_41476: 223506-229272 , PASA_asmbl_41478: 230248-240930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_270 0.0 - - myosin vIII, putative [Ricinus communis]
2 Hb_000197_210 0.088059202 - - phosphatidylinositol transporter, putative [Ricinus communis]
3 Hb_006816_390 0.0888967329 - - protein phosphatase, putative [Ricinus communis]
4 Hb_000679_130 0.0954398317 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_000034_050 0.0983959607 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
6 Hb_000236_380 0.0989827585 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
7 Hb_000836_630 0.1014226181 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
8 Hb_002529_060 0.1018280279 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
9 Hb_001348_050 0.102955899 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002400_470 0.1034163709 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_014361_100 0.1090902444 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
12 Hb_001584_290 0.1098970689 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_001047_030 0.111050309 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
14 Hb_000322_100 0.1124946211 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
15 Hb_014720_160 0.112634906 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
16 Hb_006915_060 0.1153411735 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_003641_050 0.1153554855 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
18 Hb_010222_080 0.1163772268 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
19 Hb_000025_110 0.1172261178 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
20 Hb_000592_080 0.1174240602 - - PREDICTED: thymidylate kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000042_270 Hb_000042_270 Hb_000197_210 Hb_000197_210 Hb_000042_270--Hb_000197_210 Hb_006816_390 Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000236_380 Hb_000236_380 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630 Hb_000197_210--Hb_000236_380 Hb_008406_140 Hb_008406_140 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_000197_210--Hb_006816_390 Hb_007477_080 Hb_007477_080 Hb_006816_390--Hb_007477_080 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_001100_050 Hb_001100_050 Hb_006816_390--Hb_001100_050 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_007064_040 Hb_007064_040 Hb_000836_630--Hb_007064_040 Hb_000761_020 Hb_000761_020 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4165 7.37941 8.09747 11.0805 23.4796 23.588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8512 7.41866 16.8437 3.11564 8.51003

CAGE analysis