Hb_000761_020

Information

Type -
Description -
Location Contig761: 13986-18499
Sequence    

Annotation

kegg
ID rcu:RCOM_0799210
description hypothetical protein
nr
ID XP_012077357.1
description PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57280: 14099-18469 , PASA_asmbl_57281: 15167-15496
cDNA
(Sanger)
(ID:Location)		 043_O12.ab1: 14142-18233 , 053_C17.ab1: 14142-18320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000761_020 0.0 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
2 Hb_000620_010 0.0793161731 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
3 Hb_000001_020 0.0819422781 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000436_070 0.0846213987 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
5 Hb_000836_630 0.0871416333 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
6 Hb_007064_040 0.0876781586 - - hypothetical protein RCOM_0254640 [Ricinus communis]
7 Hb_001360_040 0.088592708 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
8 Hb_003609_040 0.092929914 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
9 Hb_000481_040 0.0973120789 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
10 Hb_000120_950 0.0973132714 - - PREDICTED: protein GRIP [Jatropha curcas]
11 Hb_002182_040 0.098199412 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_003376_040 0.0983557802 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
13 Hb_005662_030 0.0984185602 - - protein with unknown function [Ricinus communis]
14 Hb_116349_160 0.0984332717 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_000699_140 0.098948672 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
16 Hb_001100_050 0.0990015669 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
17 Hb_014720_160 0.0998349652 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
18 Hb_000956_130 0.1014269297 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
19 Hb_007908_020 0.1022649309 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000000_080 0.1034316092 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000761_020 Hb_000761_020 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000025_200 Hb_000025_200 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000436_070--Hb_000120_950 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_000836_630--Hb_007064_040 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_001100_050 Hb_001100_050 Hb_007064_040--Hb_001100_050 Hb_006816_390 Hb_006816_390 Hb_007064_040--Hb_006816_390 Hb_007064_040--Hb_000699_140 Hb_116349_160 Hb_116349_160 Hb_007064_040--Hb_116349_160 Hb_001396_180 Hb_001396_180 Hb_001360_040--Hb_001396_180 Hb_003732_020 Hb_003732_020 Hb_001360_040--Hb_003732_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_002685_140 Hb_002685_140 Hb_001360_040--Hb_002685_140 Hb_001360_040--Hb_000436_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.545 19.0607 34.0228 36.533 73.9437 76.3447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.6246 45.0798 95.2727 20.7235 24.1072

CAGE analysis