Hb_001051_100

Information

Type transcription factor
Description TF Family: ARF
Location Contig1051: 155789-160475
Sequence    

Annotation

kegg
ID rcu:RCOM_0034710
description Auxin response factor, putative
nr
ID XP_002529941.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID Q653H7
description Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1
trembl
ID B9SVC2
description Auxin response factor OS=Ricinus communis GN=RCOM_0034710 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01740: 155949-160408 , PASA_asmbl_01741: 157388-159884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_100 0.0 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
2 Hb_000436_070 0.0691361615 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
3 Hb_001248_130 0.0752220981 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_001329_300 0.0777265933 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
5 Hb_000110_160 0.0787794354 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000001_140 0.0819729209 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
7 Hb_002006_090 0.0869503177 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
8 Hb_011918_080 0.0886687665 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_002687_110 0.0922758509 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_004738_040 0.0930529946 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
11 Hb_000754_060 0.0943857374 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
12 Hb_000907_080 0.0947054396 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
13 Hb_000409_020 0.0954898872 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
14 Hb_183086_060 0.0956278477 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
15 Hb_000120_950 0.0971004753 - - PREDICTED: protein GRIP [Jatropha curcas]
16 Hb_000614_230 0.0971710514 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
17 Hb_000567_260 0.0972580533 - - BnaA09g41440D [Brassica napus]
18 Hb_007908_020 0.0974669145 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000840_210 0.0975282781 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
20 Hb_000207_250 0.0981337013 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001051_100 Hb_001051_100 Hb_000436_070 Hb_000436_070 Hb_001051_100--Hb_000436_070 Hb_001248_130 Hb_001248_130 Hb_001051_100--Hb_001248_130 Hb_001329_300 Hb_001329_300 Hb_001051_100--Hb_001329_300 Hb_000110_160 Hb_000110_160 Hb_001051_100--Hb_000110_160 Hb_000001_140 Hb_000001_140 Hb_001051_100--Hb_000001_140 Hb_002006_090 Hb_002006_090 Hb_001051_100--Hb_002006_090 Hb_000120_950 Hb_000120_950 Hb_000436_070--Hb_000120_950 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000620_010 Hb_000620_010 Hb_000436_070--Hb_000620_010 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_000436_070--Hb_001248_130 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_000567_260 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_000001_140--Hb_002006_090 Hb_000907_080 Hb_000907_080 Hb_000001_140--Hb_000907_080 Hb_000001_140--Hb_001329_300 Hb_000001_140--Hb_008695_210 Hb_163145_020 Hb_163145_020 Hb_000001_140--Hb_163145_020 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6199 6.73226 7.41535 9.46415 18.3415 20.7684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3544 14.5923 38.3591 8.03735 5.2619

CAGE analysis