Hb_000001_140

Information

Type -
Description -
Location Contig1: 243314-255657
Sequence    

Annotation

kegg
ID rcu:RCOM_0423090
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012090874.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067JDI6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03064 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00119: 243562-255418 , PASA_asmbl_00120: 251967-252244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_140 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
2 Hb_002006_090 0.0709813884 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
3 Hb_000907_080 0.0752628425 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
4 Hb_001329_300 0.0786766735 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
5 Hb_001051_100 0.0819729209 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
6 Hb_008695_210 0.0869359389 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
7 Hb_163145_020 0.0915909981 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
8 Hb_001085_170 0.094846748 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
9 Hb_019654_100 0.0976276815 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
10 Hb_000614_230 0.0981985585 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
11 Hb_000457_150 0.0988792019 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
12 Hb_001248_130 0.0995815311 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
13 Hb_004738_040 0.0998025528 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
14 Hb_000110_160 0.1002049138 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006915_050 0.1011213918 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
16 Hb_011918_080 0.1014256758 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
17 Hb_006922_030 0.1016017342 - - ubiquitin, putative [Ricinus communis]
18 Hb_000567_260 0.1018010828 - - BnaA09g41440D [Brassica napus]
19 Hb_189003_080 0.1023466996 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_000200_340 0.1038288203 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_000001_140 Hb_000001_140 Hb_002006_090 Hb_002006_090 Hb_000001_140--Hb_002006_090 Hb_000907_080 Hb_000907_080 Hb_000001_140--Hb_000907_080 Hb_001329_300 Hb_001329_300 Hb_000001_140--Hb_001329_300 Hb_001051_100 Hb_001051_100 Hb_000001_140--Hb_001051_100 Hb_008695_210 Hb_008695_210 Hb_000001_140--Hb_008695_210 Hb_163145_020 Hb_163145_020 Hb_000001_140--Hb_163145_020 Hb_002006_090--Hb_001329_300 Hb_000614_230 Hb_000614_230 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000907_080--Hb_008695_210 Hb_189003_080 Hb_189003_080 Hb_000907_080--Hb_189003_080 Hb_000907_080--Hb_006915_050 Hb_000409_020 Hb_000409_020 Hb_000907_080--Hb_000409_020 Hb_000898_040 Hb_000898_040 Hb_000907_080--Hb_000898_040 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_000567_260 Hb_000567_260 Hb_001329_300--Hb_000567_260 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_001329_300--Hb_008695_210 Hb_000436_070 Hb_000436_070 Hb_001051_100--Hb_000436_070 Hb_001248_130 Hb_001248_130 Hb_001051_100--Hb_001248_130 Hb_001051_100--Hb_001329_300 Hb_001051_100--Hb_000110_160 Hb_001051_100--Hb_002006_090 Hb_008695_210--Hb_000614_230 Hb_008695_210--Hb_006915_050 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_163145_020--Hb_001329_300 Hb_163145_020--Hb_000567_260 Hb_000635_220 Hb_000635_220 Hb_163145_020--Hb_000635_220 Hb_163145_020--Hb_002006_090 Hb_000457_150 Hb_000457_150 Hb_163145_020--Hb_000457_150 Hb_163145_020--Hb_000614_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.5046 35.5596 17.5565 20.6267 51.3394 49.2102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.7586 41.2239 122.221 25.3299 17.6675

CAGE analysis