Hb_000635_220

Information

Type -
Description -
Location Contig635: 153452-155453
Sequence    

Annotation

kegg
ID rcu:RCOM_1080380
description hypothetical protein
nr
ID XP_012085679.1
description PREDICTED: F-box protein At1g67340 [Jatropha curcas]
swissprot
ID Q9FYF9
description F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1
trembl
ID A0A067JVI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17961 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51928: 153454-155383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_220 0.0 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
2 Hb_003687_100 0.0631192844 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
3 Hb_000343_130 0.0652234516 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
4 Hb_163145_020 0.0848884425 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
5 Hb_007747_200 0.0884557531 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
6 Hb_000317_280 0.0913912955 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
7 Hb_006846_110 0.0914214719 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
8 Hb_001329_300 0.0917636762 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
9 Hb_003750_080 0.0941917643 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
10 Hb_001975_160 0.0980497843 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000935_050 0.0984208403 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
12 Hb_016901_010 0.0991344561 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
13 Hb_002006_090 0.0996379832 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
14 Hb_000457_150 0.1012608741 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
15 Hb_001500_040 0.1029918349 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000776_110 0.1030411815 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
17 Hb_001226_020 0.1034717869 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
18 Hb_003861_080 0.1046765906 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
19 Hb_002496_040 0.1054899385 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
20 Hb_000805_020 0.1081676882 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000635_220 Hb_000635_220 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_000343_130 Hb_000343_130 Hb_000635_220--Hb_000343_130 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_007747_200 Hb_007747_200 Hb_000635_220--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110 Hb_000236_140 Hb_000236_140 Hb_003687_100--Hb_000236_140 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_007075_050 Hb_007075_050 Hb_003687_100--Hb_007075_050 Hb_007416_270 Hb_007416_270 Hb_003687_100--Hb_007416_270 Hb_003687_100--Hb_000343_130 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_000343_130--Hb_007747_200 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_001329_300 Hb_001329_300 Hb_163145_020--Hb_001329_300 Hb_000567_260 Hb_000567_260 Hb_163145_020--Hb_000567_260 Hb_163145_020--Hb_002006_090 Hb_000457_150 Hb_000457_150 Hb_163145_020--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_163145_020--Hb_000614_230 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_000317_280 Hb_007747_200--Hb_006846_110 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_007747_200--Hb_016901_010 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_000317_280--Hb_006846_110 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2484 17.3084 3.71169 6.01408 22.5202 26.5348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6597 26.8845 53.5288 23.52 10.5062

CAGE analysis