Hb_000620_010

Information

Type -
Description -
Location Contig620: 19558-26128
Sequence    

Annotation

kegg
ID tcc:TCM_033583
description LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 1
nr
ID XP_012068525.1
description PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
swissprot
ID Q9SLK2
description ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1
trembl
ID A0A067KXV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03788 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lem3 (ligand-effect modulator 3) family protein cdc50 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51492: 19600-26063
cDNA
(Sanger)
(ID:Location)		 010_D21.ab1: 19608-22325 , 028_D23.ab1: 19600-22408 , 034_F21.ab1: 19600-22445 , 040_E21.ab1: 19600-22446

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000620_010 0.0 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
2 Hb_000120_950 0.0670694614 - - PREDICTED: protein GRIP [Jatropha curcas]
3 Hb_000436_070 0.0703088876 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
4 Hb_005662_030 0.0717821148 - - protein with unknown function [Ricinus communis]
5 Hb_000009_170 0.0739195771 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
6 Hb_004724_200 0.074824855 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
7 Hb_000699_140 0.0749167615 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_004109_090 0.0791165495 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001862_190 0.0791521559 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
10 Hb_000761_020 0.0793161731 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
11 Hb_001100_050 0.080152394 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
12 Hb_006922_100 0.0802044871 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
13 Hb_001006_170 0.0807952615 - - Endonuclease V, putative [Ricinus communis]
14 Hb_005663_060 0.0813951559 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
15 Hb_002811_360 0.0817386294 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
16 Hb_001454_210 0.0828475587 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
17 Hb_001199_020 0.0836122754 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
18 Hb_007441_120 0.0847267331 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
19 Hb_033153_050 0.0853272787 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
20 Hb_004055_030 0.085430474 - - casein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000620_010 Hb_000620_010 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000436_070 Hb_000436_070 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_001001_060 Hb_001001_060 Hb_000009_170--Hb_001001_060 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000120_800 Hb_000120_800 Hb_000009_170--Hb_000120_800 Hb_022137_060 Hb_022137_060 Hb_000009_170--Hb_022137_060 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.7119 15.5746 21.8092 24.6403 48.1009 51.7918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.919 31.2397 54.9426 26.2637 18.9214

CAGE analysis