Hb_009838_100

Information

Type -
Description -
Location Contig9838: 36561-44588
Sequence    

Annotation

kegg
ID rcu:RCOM_1217340
description hypothetical protein
nr
ID XP_002528347.1
description hypothetical protein RCOM_1217340 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQS8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_100 0.0 - - hypothetical protein RCOM_1217340 [Ricinus communis]
2 Hb_000331_210 0.0717658461 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
3 Hb_000179_130 0.0741150287 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
4 Hb_000009_170 0.0765434929 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
5 Hb_000062_240 0.0769957366 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
6 Hb_082609_020 0.0792070643 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000418_100 0.0794297104 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
8 Hb_002811_360 0.0818533237 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_000802_080 0.0840838124 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
10 Hb_001252_080 0.0855606674 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
11 Hb_002759_280 0.0899864081 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
12 Hb_001790_020 0.0910147744 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
13 Hb_185830_020 0.0923636425 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_006827_020 0.0934154159 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000291_110 0.0934980969 - - eukaryotic translation initiation factor [Hevea brasiliensis]
16 Hb_000321_070 0.093892358 - - protein with unknown function [Ricinus communis]
17 Hb_001789_090 0.0945663217 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
18 Hb_002027_120 0.0953241661 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_039837_010 0.0958495744 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_000160_040 0.0963549836 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_100 Hb_009838_100 Hb_000331_210 Hb_000331_210 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_000062_240 Hb_000062_240 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100 Hb_000331_210--Hb_000009_170 Hb_000331_210--Hb_000179_130 Hb_030116_020 Hb_030116_020 Hb_000331_210--Hb_030116_020 Hb_039837_010 Hb_039837_010 Hb_000331_210--Hb_039837_010 Hb_002811_360 Hb_002811_360 Hb_000331_210--Hb_002811_360 Hb_002400_310 Hb_002400_310 Hb_000179_130--Hb_002400_310 Hb_000227_240 Hb_000227_240 Hb_000179_130--Hb_000227_240 Hb_000116_480 Hb_000116_480 Hb_000179_130--Hb_000116_480 Hb_000179_130--Hb_000062_240 Hb_001001_060 Hb_001001_060 Hb_000009_170--Hb_001001_060 Hb_000620_010 Hb_000620_010 Hb_000009_170--Hb_000620_010 Hb_000120_800 Hb_000120_800 Hb_000009_170--Hb_000120_800 Hb_022137_060 Hb_022137_060 Hb_000009_170--Hb_022137_060 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_082609_020--Hb_000418_100 Hb_001584_330 Hb_001584_330 Hb_082609_020--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_082609_020--Hb_003777_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_082609_020--Hb_000062_240 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66818 1.17188 0.65239 1.45765 2.87971 3.06903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4712 1.83111 2.57347 2.23927 0.398281

CAGE analysis