Hb_000179_130

Information

Type -
Description -
Location Contig179: 110489-115912
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14720g
description POPTRDRAFT_802055; zinc finger family protein
nr
ID XP_012077012.1
description PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
swissprot
ID Q8GZ92
description Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1
trembl
ID A0A067KCD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07457 PE=4 SV=1
Gene Ontology
ID GO:0010089
description protein brevis radix-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17281: 113004-113528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_130 0.0 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
2 Hb_009838_100 0.0741150287 - - hypothetical protein RCOM_1217340 [Ricinus communis]
3 Hb_002400_310 0.0868910678 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
4 Hb_000227_240 0.0941798001 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
5 Hb_000116_480 0.0945505346 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
6 Hb_000331_210 0.0996921175 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
7 Hb_000062_240 0.1006175447 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_082609_020 0.103732187 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000291_110 0.1041140415 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_000059_210 0.1054027696 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000802_080 0.1055970726 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
12 Hb_006400_040 0.105667644 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
13 Hb_093084_060 0.1062942139 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
14 Hb_001789_090 0.1065520469 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
15 Hb_006586_050 0.107332224 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
16 Hb_004837_040 0.1078271732 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
17 Hb_007101_170 0.1079315891 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
18 Hb_002027_120 0.1080173805 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_001728_100 0.1083293243 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
20 Hb_002196_020 0.1086570176 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_130 Hb_000179_130 Hb_009838_100 Hb_009838_100 Hb_000179_130--Hb_009838_100 Hb_002400_310 Hb_002400_310 Hb_000179_130--Hb_002400_310 Hb_000227_240 Hb_000227_240 Hb_000179_130--Hb_000227_240 Hb_000116_480 Hb_000116_480 Hb_000179_130--Hb_000116_480 Hb_000331_210 Hb_000331_210 Hb_000179_130--Hb_000331_210 Hb_000062_240 Hb_000062_240 Hb_000179_130--Hb_000062_240 Hb_009838_100--Hb_000331_210 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100 Hb_007101_170 Hb_007101_170 Hb_002400_310--Hb_007101_170 Hb_093084_060 Hb_093084_060 Hb_002400_310--Hb_093084_060 Hb_000244_220 Hb_000244_220 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_000227_240--Hb_093084_060 Hb_004785_060 Hb_004785_060 Hb_000227_240--Hb_004785_060 Hb_000227_240--Hb_002400_310 Hb_000260_270 Hb_000260_270 Hb_000227_240--Hb_000260_270 Hb_004545_140 Hb_004545_140 Hb_000227_240--Hb_004545_140 Hb_000116_480--Hb_082609_020 Hb_001655_070 Hb_001655_070 Hb_000116_480--Hb_001655_070 Hb_000116_480--Hb_009838_100 Hb_000116_480--Hb_000418_100 Hb_005324_010 Hb_005324_010 Hb_000116_480--Hb_005324_010 Hb_000331_210--Hb_000009_170 Hb_030116_020 Hb_030116_020 Hb_000331_210--Hb_030116_020 Hb_039837_010 Hb_039837_010 Hb_000331_210--Hb_039837_010 Hb_002811_360 Hb_002811_360 Hb_000331_210--Hb_002811_360 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.5154 5.87173 1.6929 5.09895 8.48762 8.93503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88654 4.94373 9.53603 6.8749 0.749986

CAGE analysis