Hb_004545_140

Information

Type -
Description -
Location Contig4545: 173832-176695
Sequence    

Annotation

kegg
ID rcu:RCOM_1429770
description Gibberellin receptor GID1, putative
nr
ID KDP23572.1
description hypothetical protein JCGZ_23405 [Jatropha curcas]
swissprot
ID Q940G6
description Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1
trembl
ID A0A067JI60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23405 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gibberellin receptor gid1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43398: 172365-172901 , PASA_asmbl_43399: 173816-176345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_140 0.0 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
2 Hb_000395_190 0.0751689222 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_000347_180 0.07533003 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
4 Hb_000890_210 0.0785915334 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
5 Hb_000318_510 0.0788910948 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
6 Hb_001213_050 0.0801103691 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
7 Hb_002111_070 0.0817078831 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
8 Hb_001377_270 0.0841625315 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
9 Hb_000457_260 0.0859319152 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_000080_150 0.0862416385 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
11 Hb_002942_100 0.086564534 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
12 Hb_001143_160 0.0872110196 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
13 Hb_123352_020 0.0873155362 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
14 Hb_005699_090 0.087379196 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
15 Hb_001584_150 0.0876022012 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
16 Hb_015807_070 0.0887930329 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
17 Hb_004117_310 0.0891844574 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_000028_280 0.0901882739 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
19 Hb_089032_040 0.0904888175 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
20 Hb_012022_090 0.0906628257 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]

Gene co-expression network

sample Hb_004545_140 Hb_004545_140 Hb_000395_190 Hb_000395_190 Hb_004545_140--Hb_000395_190 Hb_000347_180 Hb_000347_180 Hb_004545_140--Hb_000347_180 Hb_000890_210 Hb_000890_210 Hb_004545_140--Hb_000890_210 Hb_000318_510 Hb_000318_510 Hb_004545_140--Hb_000318_510 Hb_001213_050 Hb_001213_050 Hb_004545_140--Hb_001213_050 Hb_002111_070 Hb_002111_070 Hb_004545_140--Hb_002111_070 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_000107_490 Hb_000107_490 Hb_000890_210--Hb_000107_490 Hb_001341_170 Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_001700_040 Hb_001700_040 Hb_000318_510--Hb_001700_040 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000318_510--Hb_000347_180 Hb_000563_640 Hb_000563_640 Hb_001213_050--Hb_000563_640 Hb_015807_070 Hb_015807_070 Hb_001213_050--Hb_015807_070 Hb_002234_170 Hb_002234_170 Hb_001213_050--Hb_002234_170 Hb_000009_600 Hb_000009_600 Hb_001213_050--Hb_000009_600 Hb_007416_180 Hb_007416_180 Hb_001213_050--Hb_007416_180 Hb_000703_150 Hb_000703_150 Hb_002111_070--Hb_000703_150 Hb_000080_150 Hb_000080_150 Hb_002111_070--Hb_000080_150 Hb_002043_140 Hb_002043_140 Hb_002111_070--Hb_002043_140 Hb_009615_170 Hb_009615_170 Hb_002111_070--Hb_009615_170 Hb_000941_130 Hb_000941_130 Hb_002111_070--Hb_000941_130 Hb_002111_070--Hb_000890_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3447 24.9567 5.46592 19.0917 21.8457 24.759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0742 14.2963 27.8312 19.1521 13.6939

CAGE analysis