Hb_001213_050

Information

Type -
Description -
Location Contig1213: 84067-87477
Sequence    

Annotation

kegg
ID rcu:RCOM_0086610
description RNA binding protein, putative
nr
ID XP_012087956.1
description PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
swissprot
ID P38478
description Uncharacterized mitochondrial protein ymf40 OS=Marchantia polymorpha GN=YMF40 PE=3 SV=1
trembl
ID A0A067JY85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25078 PE=4 SV=1
Gene Ontology
ID GO:0006397
description intron maturase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06517: 84004-84291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_050 0.0 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
2 Hb_000563_640 0.0753804159 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
3 Hb_015807_070 0.0757321744 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_002234_170 0.0783054952 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
5 Hb_004545_140 0.0801103691 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
6 Hb_000009_600 0.0805675469 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
7 Hb_007416_180 0.0809151886 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_009851_070 0.0826969226 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
9 Hb_000080_150 0.084060645 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
10 Hb_006649_050 0.0845250464 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
11 Hb_001097_050 0.0845800803 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000029_050 0.0856892678 - - expressed protein, putative [Ricinus communis]
13 Hb_000174_220 0.086885112 - - cohesin subunit rad21, putative [Ricinus communis]
14 Hb_000072_220 0.0878364536 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
15 Hb_000165_250 0.0879641141 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
16 Hb_172632_080 0.0881404654 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
17 Hb_000684_250 0.0883416545 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
18 Hb_002043_140 0.0884288585 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
19 Hb_001227_060 0.0885085948 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
20 Hb_004221_020 0.0891298799 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001213_050 Hb_001213_050 Hb_000563_640 Hb_000563_640 Hb_001213_050--Hb_000563_640 Hb_015807_070 Hb_015807_070 Hb_001213_050--Hb_015807_070 Hb_002234_170 Hb_002234_170 Hb_001213_050--Hb_002234_170 Hb_004545_140 Hb_004545_140 Hb_001213_050--Hb_004545_140 Hb_000009_600 Hb_000009_600 Hb_001213_050--Hb_000009_600 Hb_007416_180 Hb_007416_180 Hb_001213_050--Hb_007416_180 Hb_009620_050 Hb_009620_050 Hb_000563_640--Hb_009620_050 Hb_005321_020 Hb_005321_020 Hb_000563_640--Hb_005321_020 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_006831_110 Hb_006831_110 Hb_000563_640--Hb_006831_110 Hb_000922_370 Hb_000922_370 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_000395_190 Hb_000395_190 Hb_004545_140--Hb_000395_190 Hb_000347_180 Hb_000347_180 Hb_004545_140--Hb_000347_180 Hb_000890_210 Hb_000890_210 Hb_004545_140--Hb_000890_210 Hb_000318_510 Hb_000318_510 Hb_004545_140--Hb_000318_510 Hb_002111_070 Hb_002111_070 Hb_004545_140--Hb_002111_070 Hb_009851_070 Hb_009851_070 Hb_000009_600--Hb_009851_070 Hb_000796_040 Hb_000796_040 Hb_000009_600--Hb_000796_040 Hb_000009_600--Hb_002234_170 Hb_000853_210 Hb_000853_210 Hb_000009_600--Hb_000853_210 Hb_009503_030 Hb_009503_030 Hb_000009_600--Hb_009503_030 Hb_002235_300 Hb_002235_300 Hb_000009_600--Hb_002235_300 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68112 2.46514 0.83132 1.67912 2.02935 2.25545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16934 1.67729 2.40562 1.38611 1.71417

CAGE analysis