Hb_000181_070

Information

Type -
Description -
Location Contig181: 48451-53554
Sequence    

Annotation

kegg
ID rcu:RCOM_0108800
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532248.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q3E9F0
description Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
trembl
ID B9T1X9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0108800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g18475

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17493: 49465-54346 , PASA_asmbl_17494: 54053-54244
cDNA
(Sanger)
(ID:Location)		 003_D19.ab1: 50348-54323 , 025_F06.ab1: 50370-54323 , 046_G15.ab1: 50445-54323

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_070 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000125_170 0.0537694167 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
3 Hb_007416_180 0.0605406712 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
4 Hb_000512_060 0.066942573 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
5 Hb_000230_120 0.0686421867 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
6 Hb_031527_040 0.0708524943 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
7 Hb_007532_030 0.0751167247 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
8 Hb_000099_080 0.0775265521 - - kinesin light chain, putative [Ricinus communis]
9 Hb_003052_140 0.0777989381 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
10 Hb_048219_010 0.0810473096 - - coronatine-insensitive 1 [Hevea brasiliensis]
11 Hb_004785_060 0.083061047 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
12 Hb_001097_050 0.0845762375 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000926_330 0.0847814552 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
14 Hb_010128_080 0.0855482439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
15 Hb_000395_190 0.0878321899 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
16 Hb_000768_040 0.0889167353 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
17 Hb_001252_010 0.0894051467 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
18 Hb_000866_220 0.0894223696 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
19 Hb_001242_060 0.0915940635 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
20 Hb_000125_130 0.0919724616 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]

Gene co-expression network

sample Hb_000181_070 Hb_000181_070 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_007416_180 Hb_007416_180 Hb_000181_070--Hb_007416_180 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_031527_040 Hb_031527_040 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030 Hb_003052_140 Hb_003052_140 Hb_000125_170--Hb_003052_140 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_007416_180--Hb_031527_040 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_000230_120--Hb_000125_170 Hb_001488_070 Hb_001488_070 Hb_000230_120--Hb_001488_070 Hb_000125_130 Hb_000125_130 Hb_000230_120--Hb_000125_130 Hb_000230_120--Hb_009178_030 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3834 12.9451 3.63437 7.99349 9.78491 12.6955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.32583 11.5454 13.8386 5.41942 5.18854

CAGE analysis