Hb_074969_010

Information

Type -
Description -
Location Contig74969: 808-1950
Sequence    

Annotation

kegg
ID rcu:RCOM_1431670
description DNA polymerase zeta catalytic subunit, putative (EC:2.7.7.7)
nr
ID KDP23506.1
description hypothetical protein JCGZ_23339 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23339 PE=4 SV=1
Gene Ontology
ID GO:0016740
description dna polymerase zeta catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56821: 1297-1484 , PASA_asmbl_56822: 1761-1978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074969_010 0.0 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
2 Hb_000563_640 0.0736648397 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
3 Hb_002107_070 0.0761858325 - - hypothetical protein RCOM_1598630 [Ricinus communis]
4 Hb_000922_370 0.0771021661 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
5 Hb_000236_220 0.0778428963 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
6 Hb_001454_280 0.0778505176 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
7 Hb_006252_020 0.0778860145 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
8 Hb_009476_040 0.0789061579 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002615_090 0.0803032594 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
10 Hb_007576_120 0.0819064534 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
11 Hb_030565_090 0.0821167679 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
12 Hb_002174_020 0.0825057035 - - ring finger protein, putative [Ricinus communis]
13 Hb_000264_030 0.0834013744 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
14 Hb_004480_040 0.0842845891 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
15 Hb_093084_070 0.0846362978 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
16 Hb_000035_290 0.0848146165 - - RNA recognition motif-containing family protein [Populus trichocarpa]
17 Hb_007635_030 0.0856056465 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
18 Hb_005321_020 0.0869744606 - - splicing factor-related family protein [Populus trichocarpa]
19 Hb_001821_090 0.088450864 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
20 Hb_034243_020 0.0884698052 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_074969_010 Hb_074969_010 Hb_000563_640 Hb_000563_640 Hb_074969_010--Hb_000563_640 Hb_002107_070 Hb_002107_070 Hb_074969_010--Hb_002107_070 Hb_000922_370 Hb_000922_370 Hb_074969_010--Hb_000922_370 Hb_000236_220 Hb_000236_220 Hb_074969_010--Hb_000236_220 Hb_001454_280 Hb_001454_280 Hb_074969_010--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_074969_010--Hb_006252_020 Hb_009620_050 Hb_009620_050 Hb_000563_640--Hb_009620_050 Hb_005321_020 Hb_005321_020 Hb_000563_640--Hb_005321_020 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_006831_110 Hb_006831_110 Hb_000563_640--Hb_006831_110 Hb_000563_640--Hb_000922_370 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_003044_020 Hb_003044_020 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_001454_280--Hb_002174_020 Hb_001454_280--Hb_007635_030 Hb_001454_280--Hb_006252_020 Hb_008112_030 Hb_008112_030 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_006252_020--Hb_008112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5866 16.9694 5.51467 7.61685 11.0334 16.0088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54896 7.64675 7.72201 10.7855 7.89047

CAGE analysis