Hb_002078_130

Information

Type -
Description -
Location Contig2078: 82104-85862
Sequence    

Annotation

kegg
ID rcu:RCOM_1080720
description GTP binding protein, putative
nr
ID XP_012085661.1
description PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
swissprot
ID Q3MG79
description Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1
trembl
ID A0A067K4R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17947 PE=3 SV=1
Gene Ontology
ID GO:0003924
description ribosome biogenesis gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21415: 83035-83268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_130 0.0 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
2 Hb_000395_190 0.0627036805 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_000329_470 0.0696205425 - - ccr4-not transcription complex, putative [Ricinus communis]
4 Hb_003761_010 0.0699232818 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_001369_730 0.0750683576 - - F5O11.10, putative isoform 1 [Theobroma cacao]
6 Hb_000099_080 0.0761645928 - - kinesin light chain, putative [Ricinus communis]
7 Hb_000260_270 0.0767330807 - - zinc finger protein, putative [Ricinus communis]
8 Hb_011671_250 0.0804406767 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_021409_040 0.0823402365 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
10 Hb_001579_220 0.0837212298 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
11 Hb_010128_080 0.0850450313 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
12 Hb_000645_090 0.0859108098 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022115_020 0.0862060987 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
14 Hb_000680_160 0.0862761054 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
15 Hb_000732_010 0.0868918851 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_002107_030 0.0869607967 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
17 Hb_000035_320 0.0869840919 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
18 Hb_167498_010 0.087084101 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_001538_130 0.0871406995 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005731_130 0.0873266134 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_130 Hb_002078_130 Hb_000395_190 Hb_000395_190 Hb_002078_130--Hb_000395_190 Hb_000329_470 Hb_000329_470 Hb_002078_130--Hb_000329_470 Hb_003761_010 Hb_003761_010 Hb_002078_130--Hb_003761_010 Hb_001369_730 Hb_001369_730 Hb_002078_130--Hb_001369_730 Hb_000099_080 Hb_000099_080 Hb_002078_130--Hb_000099_080 Hb_000260_270 Hb_000260_270 Hb_002078_130--Hb_000260_270 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_000395_190--Hb_000099_080 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_001369_730--Hb_167498_010 Hb_001409_020 Hb_001409_020 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_000099_080--Hb_010128_080 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04542 9.19986 3.11129 9.79125 9.91038 8.26475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0911 9.96151 9.85064 9.14583 6.2839

CAGE analysis