Hb_001377_270

Information

Type -
Description -
Location Contig1377: 266058-274761
Sequence    

Annotation

kegg
ID cic:CICLE_v10021159mg
description hypothetical protein
nr
ID XP_006444835.1
description hypothetical protein CICLE_v10021159mg [Citrus clementina]
swissprot
ID Q84JL3
description E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
trembl
ID V4U1Z4
description E3 ubiquitin-protein ligase OS=Citrus clementina GN=CICLE_v10021159mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10414: 266508-266775 , PASA_asmbl_10415: 266870-269046 , PASA_asmbl_10416: 268808-269038 , PASA_asmbl_10417: 270826-274684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_270 0.0 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
2 Hb_000080_150 0.0592483655 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
3 Hb_005269_040 0.0676162294 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
4 Hb_001538_130 0.0728051641 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000347_180 0.0735371726 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
6 Hb_000608_320 0.0801507736 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
7 Hb_000366_120 0.0803035568 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
8 Hb_001799_180 0.0829368588 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
9 Hb_002027_290 0.083001145 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
10 Hb_004545_140 0.0841625315 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
11 Hb_000213_010 0.0845051278 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
12 Hb_000099_080 0.0853180691 - - kinesin light chain, putative [Ricinus communis]
13 Hb_000395_190 0.0855467632 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
14 Hb_000060_090 0.0863391376 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
15 Hb_000890_210 0.0871396295 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
16 Hb_001018_130 0.087188808 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
17 Hb_021409_040 0.0890434594 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_002662_020 0.0896744208 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
19 Hb_002078_130 0.0904201882 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_012022_090 0.0916721125 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]

Gene co-expression network

sample Hb_001377_270 Hb_001377_270 Hb_000080_150 Hb_000080_150 Hb_001377_270--Hb_000080_150 Hb_005269_040 Hb_005269_040 Hb_001377_270--Hb_005269_040 Hb_001538_130 Hb_001538_130 Hb_001377_270--Hb_001538_130 Hb_000347_180 Hb_000347_180 Hb_001377_270--Hb_000347_180 Hb_000608_320 Hb_000608_320 Hb_001377_270--Hb_000608_320 Hb_000366_120 Hb_000366_120 Hb_001377_270--Hb_000366_120 Hb_000080_150--Hb_000366_120 Hb_002111_070 Hb_002111_070 Hb_000080_150--Hb_002111_070 Hb_003640_040 Hb_003640_040 Hb_000080_150--Hb_003640_040 Hb_004195_200 Hb_004195_200 Hb_000080_150--Hb_004195_200 Hb_001248_060 Hb_001248_060 Hb_000080_150--Hb_001248_060 Hb_144528_010 Hb_144528_010 Hb_005269_040--Hb_144528_010 Hb_005269_040--Hb_001538_130 Hb_002662_020 Hb_002662_020 Hb_005269_040--Hb_002662_020 Hb_000192_080 Hb_000192_080 Hb_005269_040--Hb_000192_080 Hb_074715_010 Hb_074715_010 Hb_005269_040--Hb_074715_010 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000318_290 Hb_000318_290 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1367 12.1118 4.22115 15.5054 11.9534 13.1534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91045 9.38114 12.3117 8.33185 7.16416

CAGE analysis