Hb_005269_040

Information

Type -
Description -
Location Contig5269: 14385-19595
Sequence    

Annotation

kegg
ID vvi:100259255
description pentatricopeptide repeat-containing protein At1g06270
nr
ID XP_012079032.1
description PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
swissprot
ID Q9LNC0
description Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1
trembl
ID E0CTM4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02610 PE=4 SV=1
Gene Ontology
ID GO:0042170
description pentatricopeptide repeat-containing protein at1g06270

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47016: 14603-15562 , PASA_asmbl_47017: 16790-17652 , PASA_asmbl_47018: 18338-19249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005269_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
2 Hb_144528_010 0.0628714898 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_001377_270 0.0676162294 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
4 Hb_001538_130 0.0786407109 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002662_020 0.0801923138 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
6 Hb_000192_080 0.085384061 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
7 Hb_074715_010 0.0864122935 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
8 Hb_001018_130 0.0901181126 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
9 Hb_001205_240 0.090305453 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
10 Hb_000441_140 0.091315563 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
11 Hb_000080_150 0.0919255071 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
12 Hb_001766_080 0.0934845615 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
13 Hb_000347_180 0.0951540475 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_004143_040 0.0962596402 - - argininosuccinate lyase, putative [Ricinus communis]
15 Hb_000208_280 0.0975797839 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
16 Hb_028962_020 0.098259645 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
17 Hb_050454_010 0.0994821298 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
18 Hb_001674_030 0.0999640341 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
19 Hb_044736_010 0.0999832813 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000009_560 0.1003892581 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005269_040 Hb_005269_040 Hb_144528_010 Hb_144528_010 Hb_005269_040--Hb_144528_010 Hb_001377_270 Hb_001377_270 Hb_005269_040--Hb_001377_270 Hb_001538_130 Hb_001538_130 Hb_005269_040--Hb_001538_130 Hb_002662_020 Hb_002662_020 Hb_005269_040--Hb_002662_020 Hb_000192_080 Hb_000192_080 Hb_005269_040--Hb_000192_080 Hb_074715_010 Hb_074715_010 Hb_005269_040--Hb_074715_010 Hb_144528_010--Hb_001538_130 Hb_005731_120 Hb_005731_120 Hb_144528_010--Hb_005731_120 Hb_005914_080 Hb_005914_080 Hb_144528_010--Hb_005914_080 Hb_001287_080 Hb_001287_080 Hb_144528_010--Hb_001287_080 Hb_007881_030 Hb_007881_030 Hb_144528_010--Hb_007881_030 Hb_000080_150 Hb_000080_150 Hb_001377_270--Hb_000080_150 Hb_001377_270--Hb_001538_130 Hb_000347_180 Hb_000347_180 Hb_001377_270--Hb_000347_180 Hb_000608_320 Hb_000608_320 Hb_001377_270--Hb_000608_320 Hb_000366_120 Hb_000366_120 Hb_001377_270--Hb_000366_120 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_032808_030 Hb_032808_030 Hb_002662_020--Hb_032808_030 Hb_004143_040 Hb_004143_040 Hb_002662_020--Hb_004143_040 Hb_000116_410 Hb_000116_410 Hb_002662_020--Hb_000116_410 Hb_002026_210 Hb_002026_210 Hb_002662_020--Hb_002026_210 Hb_002662_020--Hb_000347_180 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_005048_130 Hb_005048_130 Hb_074715_010--Hb_005048_130 Hb_074715_010--Hb_002662_020 Hb_074715_010--Hb_001377_270 Hb_074715_010--Hb_004143_040 Hb_028962_020 Hb_028962_020 Hb_074715_010--Hb_028962_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02593 6.88743 2.55617 9.74044 4.34913 8.42645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13623 6.21873 5.97413 4.93701 4.01035

CAGE analysis