Hb_021409_040

Information

Type -
Description -
Location Contig21409: 18769-22805
Sequence    

Annotation

kegg
ID rcu:RCOM_1312920
description UBX domain-containing protein, putative
nr
ID XP_012086650.1
description PREDICTED: FAS-associated factor 2 [Jatropha curcas]
swissprot
ID Q9M0N1
description Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1
trembl
ID A0A067JMP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20392 PE=4 SV=1
Gene Ontology
ID GO:0005886
description fas-associated factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22111: 18783-22739
cDNA
(Sanger)
(ID:Location)		 019_C14.ab1: 22434-22736

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_040 0.0 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
2 Hb_000366_120 0.0536797768 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
3 Hb_014497_050 0.0578916517 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
4 Hb_001409_020 0.0675733711 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
5 Hb_006634_070 0.0699167854 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
6 Hb_000958_140 0.071583511 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
7 Hb_022115_020 0.0723471143 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
8 Hb_005144_160 0.0726567656 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
9 Hb_007576_110 0.0731591866 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
10 Hb_000780_230 0.0744480398 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
11 Hb_000732_010 0.0775779216 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
12 Hb_167498_010 0.078209211 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
13 Hb_000915_180 0.0782595271 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
14 Hb_000484_030 0.0785370889 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
15 Hb_004619_030 0.0786033951 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
16 Hb_000975_040 0.0791856372 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
17 Hb_001408_040 0.0793790267 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_000152_380 0.0797683369 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
19 Hb_003163_020 0.0799455698 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
20 Hb_013399_100 0.0807630159 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021409_040 Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_021409_040--Hb_000366_120 Hb_014497_050 Hb_014497_050 Hb_021409_040--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_021409_040--Hb_001409_020 Hb_006634_070 Hb_006634_070 Hb_021409_040--Hb_006634_070 Hb_000958_140 Hb_000958_140 Hb_021409_040--Hb_000958_140 Hb_022115_020 Hb_022115_020 Hb_021409_040--Hb_022115_020 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_000366_120--Hb_014497_050 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310 Hb_011671_430 Hb_011671_430 Hb_014497_050--Hb_011671_430 Hb_000915_020 Hb_000915_020 Hb_014497_050--Hb_000915_020 Hb_028285_010 Hb_028285_010 Hb_014497_050--Hb_028285_010 Hb_000030_190 Hb_000030_190 Hb_014497_050--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_001409_020--Hb_007576_110 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_000975_040 Hb_000975_040 Hb_000958_140--Hb_000975_040 Hb_001047_220 Hb_001047_220 Hb_000958_140--Hb_001047_220 Hb_001369_130 Hb_001369_130 Hb_000958_140--Hb_001369_130 Hb_138596_010 Hb_138596_010 Hb_000958_140--Hb_138596_010 Hb_000958_140--Hb_001409_020 Hb_001379_110 Hb_001379_110 Hb_000958_140--Hb_001379_110 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1116 29.7251 20.3689 32.1389 38.7225 26.6198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3814 26.0988 33.433 26.941 19.3976

CAGE analysis