Hb_001379_110

Information

Type -
Description -
Location Contig1379: 81118-89262
Sequence    

Annotation

kegg
ID rcu:RCOM_1383140
description hypothetical protein
nr
ID XP_012093167.1
description PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
swissprot
ID F4IP69
description Sec1 family domain-containing protein MIP3 OS=Arabidopsis thaliana GN=MIP3 PE=1 SV=1
trembl
ID A0A067LIS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16378 PE=4 SV=1
Gene Ontology
ID GO:0005623
description sec1 family domain-containing protein mip3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10467: 81584-82032 , PASA_asmbl_10468: 82340-82714 , PASA_asmbl_10469: 82839-84021 , PASA_asmbl_10470: 84037-84164 , PASA_asmbl_10471: 84268-86675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_110 0.0 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
2 Hb_034432_030 0.0270969823 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
3 Hb_001047_220 0.0598990875 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
4 Hb_000975_040 0.0622803531 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
5 Hb_000958_140 0.067211817 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
6 Hb_000544_010 0.0677965092 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
7 Hb_027380_140 0.0702739363 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
8 Hb_000671_070 0.0710051064 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
9 Hb_000462_060 0.0714853258 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
10 Hb_000563_130 0.0722022192 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_009503_030 0.0727687994 - - protein dimerization, putative [Ricinus communis]
12 Hb_001369_130 0.0742803529 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
13 Hb_109980_010 0.0748817762 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
14 Hb_003018_130 0.0762053447 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
15 Hb_012053_080 0.0763245753 - - AP-2 complex subunit alpha, putative [Ricinus communis]
16 Hb_000207_180 0.0767013084 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
17 Hb_008024_030 0.0768912665 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
18 Hb_006420_040 0.0774723653 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
19 Hb_000343_250 0.0775426909 - - PREDICTED: protein CASC3 [Jatropha curcas]
20 Hb_012395_140 0.0778639606 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]

Gene co-expression network

sample Hb_001379_110 Hb_001379_110 Hb_034432_030 Hb_034432_030 Hb_001379_110--Hb_034432_030 Hb_001047_220 Hb_001047_220 Hb_001379_110--Hb_001047_220 Hb_000975_040 Hb_000975_040 Hb_001379_110--Hb_000975_040 Hb_000958_140 Hb_000958_140 Hb_001379_110--Hb_000958_140 Hb_000544_010 Hb_000544_010 Hb_001379_110--Hb_000544_010 Hb_027380_140 Hb_027380_140 Hb_001379_110--Hb_027380_140 Hb_034432_030--Hb_001047_220 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_001047_220--Hb_000975_040 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_001369_130 Hb_001369_130 Hb_000975_040--Hb_001369_130 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_012395_140 Hb_012395_140 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_000958_140--Hb_001369_130 Hb_000958_140--Hb_138596_010 Hb_001409_020 Hb_001409_020 Hb_000958_140--Hb_001409_020 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000544_010--Hb_000076_130 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90264 4.4259 5.07028 4.15394 7.94802 5.87012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.29145 3.35049 4.92876 4.98683 5.67434

CAGE analysis