Hb_000227_240

Information

Type -
Description -
Location Contig227: 211600-212766
Sequence    

Annotation

kegg
ID rcu:RCOM_0913810
description hypothetical protein
nr
ID KDP40141.1
description hypothetical protein JCGZ_02139 [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID A0A067KVA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02139 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23623: 211508-213035
cDNA
(Sanger)
(ID:Location)		 016_A21.ab1: 211513-212296 , 019_G16.ab1: 211503-212223

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_240 0.0 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
2 Hb_093084_060 0.0881564474 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
3 Hb_004785_060 0.0935075538 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
4 Hb_002400_310 0.0939174288 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
5 Hb_000179_130 0.0941798001 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
6 Hb_000260_270 0.1009069102 - - zinc finger protein, putative [Ricinus communis]
7 Hb_004545_140 0.1027007415 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
8 Hb_000000_370 0.1073861789 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
9 Hb_005731_130 0.1079476095 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_000318_510 0.1097631746 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
11 Hb_001789_090 0.1103506947 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
12 Hb_011218_040 0.1106122005 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
13 Hb_009701_010 0.111332949 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
14 Hb_004837_040 0.1126735376 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
15 Hb_000859_060 0.113143526 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
16 Hb_012807_050 0.1133164919 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
17 Hb_002631_060 0.1135079595 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
18 Hb_000291_110 0.1137378812 - - eukaryotic translation initiation factor [Hevea brasiliensis]
19 Hb_005306_130 0.1155723685 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000395_190 0.1160957959 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000227_240 Hb_000227_240 Hb_093084_060 Hb_093084_060 Hb_000227_240--Hb_093084_060 Hb_004785_060 Hb_004785_060 Hb_000227_240--Hb_004785_060 Hb_002400_310 Hb_002400_310 Hb_000227_240--Hb_002400_310 Hb_000179_130 Hb_000179_130 Hb_000227_240--Hb_000179_130 Hb_000260_270 Hb_000260_270 Hb_000227_240--Hb_000260_270 Hb_004545_140 Hb_004545_140 Hb_000227_240--Hb_004545_140 Hb_093084_060--Hb_002400_310 Hb_181235_010 Hb_181235_010 Hb_093084_060--Hb_181235_010 Hb_000373_150 Hb_000373_150 Hb_093084_060--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_004837_040 Hb_004837_040 Hb_093084_060--Hb_004837_040 Hb_000859_060 Hb_000859_060 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_012807_050 Hb_012807_050 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_007101_170 Hb_007101_170 Hb_002400_310--Hb_007101_170 Hb_000244_220 Hb_000244_220 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_009838_100 Hb_009838_100 Hb_000179_130--Hb_009838_100 Hb_000179_130--Hb_002400_310 Hb_000116_480 Hb_000116_480 Hb_000179_130--Hb_000116_480 Hb_000331_210 Hb_000331_210 Hb_000179_130--Hb_000331_210 Hb_000062_240 Hb_000062_240 Hb_000179_130--Hb_000062_240 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_004545_140--Hb_000395_190 Hb_000347_180 Hb_000347_180 Hb_004545_140--Hb_000347_180 Hb_000890_210 Hb_000890_210 Hb_004545_140--Hb_000890_210 Hb_004545_140--Hb_000318_510 Hb_001213_050 Hb_001213_050 Hb_004545_140--Hb_001213_050 Hb_002111_070 Hb_002111_070 Hb_004545_140--Hb_002111_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1896 38.9637 5.38028 25.9045 26.6385 37.6891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4914 24.2869 42.6625 34.0433 6.81837

CAGE analysis