Hb_000184_110

Information

Type -
Description -
Location Contig184: 110343-123940
Sequence    

Annotation

kegg
ID egr:104437063
description indole-3-glycerol phosphate synthase, chloroplastic-like
nr
ID KHG00158.1
description hypothetical protein F383_18769 [Gossypium arboreum]
swissprot
ID P49572
description Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2
trembl
ID A0A0B0MDB2
description Uncharacterized protein OS=Gossypium arboreum GN=F383_18769 PE=3 SV=1
Gene Ontology
ID GO:0004425
description indole-3-glycerol phosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17990: 116028-116670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_110 0.0 - - hypothetical protein F383_18769 [Gossypium arboreum]
2 Hb_001017_040 0.0556208636 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
3 Hb_005396_130 0.0702629997 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_004452_100 0.0711379715 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
5 Hb_000729_050 0.071336986 - - Pinin, putative [Ricinus communis]
6 Hb_005662_030 0.0718049733 - - protein with unknown function [Ricinus communis]
7 Hb_108216_040 0.0753326652 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
8 Hb_000179_020 0.0754100326 - - amidase, putative [Ricinus communis]
9 Hb_002174_060 0.076176046 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
10 Hb_004195_280 0.0765877121 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
11 Hb_000034_050 0.0776537428 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
12 Hb_000661_050 0.0784392675 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
13 Hb_000244_250 0.0800011161 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
14 Hb_000100_070 0.0808024335 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
15 Hb_002798_040 0.0815964626 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
16 Hb_007407_040 0.0816762264 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000803_300 0.0817034991 - - nuclear movement protein nudc, putative [Ricinus communis]
18 Hb_009265_080 0.0840088382 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
19 Hb_012760_170 0.0847569613 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_001366_040 0.085458703 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000184_110 Hb_000184_110 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010 Hb_001322_190 Hb_001322_190 Hb_005396_130--Hb_001322_190 Hb_005396_130--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_005396_130--Hb_002798_040 Hb_000100_070 Hb_000100_070 Hb_005396_130--Hb_000100_070 Hb_004452_100--Hb_002798_040 Hb_001366_040 Hb_001366_040 Hb_004452_100--Hb_001366_040 Hb_011318_010 Hb_011318_010 Hb_004452_100--Hb_011318_010 Hb_000244_250 Hb_000244_250 Hb_004452_100--Hb_000244_250 Hb_004452_100--Hb_002039_010 Hb_007407_040 Hb_007407_040 Hb_000729_050--Hb_007407_040 Hb_011316_110 Hb_011316_110 Hb_000729_050--Hb_011316_110 Hb_000729_050--Hb_004452_100 Hb_003001_150 Hb_003001_150 Hb_000729_050--Hb_003001_150 Hb_008143_030 Hb_008143_030 Hb_000729_050--Hb_008143_030 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_108216_040--Hb_000100_070 Hb_000640_320 Hb_000640_320 Hb_108216_040--Hb_000640_320 Hb_108216_040--Hb_008143_030 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.0139 14.8092 10.3031 10.1024 47.1144 51.9446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.46 21.8657 32.0252 18.3689 19.8261

CAGE analysis