Hb_001322_190

Information

Type -
Description -
Location Contig1322: 174554-176050
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15160g
description hypothetical protein
nr
ID XP_012070140.1
description PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L618
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03476 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09285: 175271-176117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_190 0.0 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
2 Hb_001862_190 0.0688764714 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_005396_130 0.0773220434 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_000020_190 0.0843165468 - - hypothetical protein RCOM_0452240 [Ricinus communis]
5 Hb_001019_230 0.0898917665 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
6 Hb_000699_140 0.0904202722 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
7 Hb_006922_100 0.0915096237 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
8 Hb_001771_140 0.0934185171 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
9 Hb_005662_030 0.0972448749 - - protein with unknown function [Ricinus communis]
10 Hb_001100_050 0.0980440176 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
11 Hb_000345_170 0.0998263673 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
12 Hb_001936_060 0.1002278593 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
13 Hb_001245_070 0.1031963444 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
14 Hb_000107_620 0.1032189804 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
15 Hb_000072_220 0.1044006271 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
16 Hb_007894_140 0.1049903562 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
17 Hb_004724_200 0.1056566889 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
18 Hb_001017_040 0.1060758059 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
19 Hb_033153_050 0.1060950962 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
20 Hb_000100_070 0.1063407808 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001322_190 Hb_001322_190 Hb_001862_190 Hb_001862_190 Hb_001322_190--Hb_001862_190 Hb_005396_130 Hb_005396_130 Hb_001322_190--Hb_005396_130 Hb_000020_190 Hb_000020_190 Hb_001322_190--Hb_000020_190 Hb_001019_230 Hb_001019_230 Hb_001322_190--Hb_001019_230 Hb_000699_140 Hb_000699_140 Hb_001322_190--Hb_000699_140 Hb_006922_100 Hb_006922_100 Hb_001322_190--Hb_006922_100 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_001862_190--Hb_006922_100 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_000184_110 Hb_000184_110 Hb_005396_130--Hb_000184_110 Hb_001017_040 Hb_001017_040 Hb_005396_130--Hb_001017_040 Hb_004452_100 Hb_004452_100 Hb_005396_130--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_005396_130--Hb_002798_040 Hb_000100_070 Hb_000100_070 Hb_005396_130--Hb_000100_070 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_004096_030 Hb_004096_030 Hb_001019_230--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_001019_230--Hb_004934_090 Hb_154745_010 Hb_154745_010 Hb_001019_230--Hb_154745_010 Hb_004447_060 Hb_004447_060 Hb_001019_230--Hb_004447_060 Hb_000661_050 Hb_000661_050 Hb_001019_230--Hb_000661_050 Hb_001019_230--Hb_001862_190 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_000699_140--Hb_007477_080 Hb_000699_140--Hb_001862_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7775 8.30835 5.25375 5.69153 11.4091 17.3702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.214 12.0664 15.4054 8.08988 11.3844

CAGE analysis