Hb_003732_020

Information

Type -
Description -
Location Contig3732: 23928-28853
Sequence    

Annotation

kegg
ID rcu:RCOM_1498100
description phosphoglucomutase, putative (EC:5.4.2.2)
nr
ID XP_011041651.1
description PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
swissprot
ID Q9SM59
description Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1
trembl
ID B9R9J6
description Phosphoglucomutase, putative OS=Ricinus communis GN=RCOM_1498100 PE=4 SV=1
Gene Ontology
ID GO:0016868
description chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38159: 3532-28850 , PASA_asmbl_38160: 3532-24178 , PASA_asmbl_38161: 26680-26993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003732_020 0.0 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
2 Hb_000264_240 0.06928531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000175_440 0.0726201129 - - signal peptidase family protein [Populus trichocarpa]
4 Hb_001360_040 0.0812390338 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
5 Hb_002685_140 0.0826456026 - - PREDICTED: membrin-11 [Jatropha curcas]
6 Hb_000787_050 0.0865780958 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
7 Hb_001135_050 0.0893194647 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_002253_070 0.0918104878 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
9 Hb_011689_080 0.0933372275 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
10 Hb_001396_180 0.0938362781 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
11 Hb_000046_280 0.0962995 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
12 Hb_000620_010 0.0966968206 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_000331_080 0.0970499179 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
14 Hb_001404_100 0.0976391128 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
15 Hb_025645_010 0.0985950815 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
16 Hb_002835_240 0.0986034992 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
17 Hb_001604_010 0.0988472174 - - 14-3-3 protein, putative [Ricinus communis]
18 Hb_000053_130 0.0995617162 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
19 Hb_015746_010 0.1003413643 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
20 Hb_026527_030 0.1004220101 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003732_020 Hb_003732_020 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_001360_040 Hb_001360_040 Hb_003732_020--Hb_001360_040 Hb_002685_140 Hb_002685_140 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_000264_240--Hb_002685_140 Hb_000025_200 Hb_000025_200 Hb_000264_240--Hb_000025_200 Hb_000264_240--Hb_001360_040 Hb_000264_240--Hb_000175_440 Hb_001396_180 Hb_001396_180 Hb_000264_240--Hb_001396_180 Hb_000175_440--Hb_000787_050 Hb_025645_010 Hb_025645_010 Hb_000175_440--Hb_025645_010 Hb_000175_440--Hb_002685_140 Hb_002835_240 Hb_002835_240 Hb_000175_440--Hb_002835_240 Hb_000327_120 Hb_000327_120 Hb_000175_440--Hb_000327_120 Hb_001360_040--Hb_001396_180 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_000787_050--Hb_002835_240 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_000169_010 Hb_000169_010 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_004048_070 Hb_004048_070 Hb_001135_050--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.6316 17.388 36.8509 24.0353 54.7824 47.2475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.2844 47.7854 65.0393 27.145 19.7383

CAGE analysis