Hb_000264_240

Information

Type -
Description -
Location Contig264: 194545-202605
Sequence    

Annotation

kegg
ID rcu:RCOM_0936080
description hypothetical protein
nr
ID XP_002519052.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0936080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27618: 194676-202454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003732_020 0.06928531 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
3 Hb_002685_140 0.079354606 - - PREDICTED: membrin-11 [Jatropha curcas]
4 Hb_000025_200 0.0927749374 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
5 Hb_001360_040 0.0937656276 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
6 Hb_000175_440 0.0960317108 - - signal peptidase family protein [Populus trichocarpa]
7 Hb_001396_180 0.0970112119 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
8 Hb_000046_280 0.0974078085 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
9 Hb_004812_010 0.1020742908 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
10 Hb_000041_080 0.1027244576 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
11 Hb_000538_020 0.103636384 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
12 Hb_021443_070 0.104473872 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
13 Hb_001135_050 0.1052317622 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_001124_120 0.1053391602 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
15 Hb_150360_030 0.1060854021 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
16 Hb_000179_170 0.1073474323 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
17 Hb_000001_020 0.108051881 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
18 Hb_001246_090 0.1088453918 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
19 Hb_011689_080 0.1088971457 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
20 Hb_000053_130 0.1092534445 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000264_240 Hb_000264_240 Hb_003732_020 Hb_003732_020 Hb_000264_240--Hb_003732_020 Hb_002685_140 Hb_002685_140 Hb_000264_240--Hb_002685_140 Hb_000025_200 Hb_000025_200 Hb_000264_240--Hb_000025_200 Hb_001360_040 Hb_001360_040 Hb_000264_240--Hb_001360_040 Hb_000175_440 Hb_000175_440 Hb_000264_240--Hb_000175_440 Hb_001396_180 Hb_001396_180 Hb_000264_240--Hb_001396_180 Hb_003732_020--Hb_000175_440 Hb_003732_020--Hb_001360_040 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_000327_120 Hb_000327_120 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_000001_020 Hb_000001_020 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_001360_040--Hb_001396_180 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_000175_440--Hb_000787_050 Hb_025645_010 Hb_025645_010 Hb_000175_440--Hb_025645_010 Hb_000175_440--Hb_002685_140 Hb_002835_240 Hb_002835_240 Hb_000175_440--Hb_002835_240 Hb_000175_440--Hb_000327_120 Hb_001396_180--Hb_003376_040 Hb_005539_350 Hb_005539_350 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_000096_090 Hb_000096_090 Hb_001396_180--Hb_000096_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0469 15.0336 28.8994 17.3965 62.1453 39.8884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.3672 39.1237 47.0464 14.5192 14.3427

CAGE analysis