Hb_000001_020

Information

Type -
Description -
Location Contig1: 32602-49295
Sequence    

Annotation

kegg
ID rcu:RCOM_0037080
description bacteriochlorophyll synthase, putative
nr
ID XP_012090862.1
description PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q1ACB3
description Homogentisate solanesyltransferase, chloroplastic OS=Arabidopsis thaliana GN=HST PE=1 SV=1
trembl
ID A0A067JGJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03051 PE=4 SV=1
Gene Ontology
ID GO:0009941
description homogentisate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00104: 28632-49191
cDNA
(Sanger)
(ID:Location)		 013_I10.ab1: 35636-49191

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_020 0.0 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
2 Hb_003609_040 0.0491961252 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
3 Hb_000025_200 0.064633489 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
4 Hb_007908_020 0.0751996235 - - zinc finger family protein [Populus trichocarpa]
5 Hb_000017_120 0.0754731914 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
6 Hb_000107_390 0.0776223915 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
7 Hb_000761_020 0.0819422781 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
8 Hb_002027_130 0.0826675239 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
9 Hb_007547_010 0.0829884805 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
10 Hb_000771_110 0.0851969449 - - protein phosphatase 2C [Hevea brasiliensis]
11 Hb_001006_170 0.086252741 - - Endonuclease V, putative [Ricinus communis]
12 Hb_001001_160 0.0867475144 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
13 Hb_000030_010 0.0883228619 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_000943_070 0.088441585 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
15 Hb_014720_160 0.0894969119 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
16 Hb_000172_370 0.0896886039 - - -
17 Hb_168918_020 0.0900815736 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_000538_020 0.090138073 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
19 Hb_005306_110 0.0902866756 - - casein kinase, putative [Ricinus communis]
20 Hb_012340_030 0.0916192828 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_020 Hb_000001_020 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000025_200 Hb_000025_200 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_000025_200--Hb_007908_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_012340_030 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6249 9.49223 13.065 13.7364 46.1667 36.4671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2638 26.5219 35.7327 7.88384 7.6349

CAGE analysis